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The map label for this gene is gntR [H]

Identifier: 158423667

GI number: 158423667

Start: 2356009

End: 2356719

Strand: Reverse

Name: gntR [H]

Synonym: AZC_2043

Alternate gene names: 158423667

Gene position: 2356719-2356009 (Counterclockwise)

Preceding gene: 158423674

Following gene: 158423665

Centisome position: 43.89

GC content: 68.21

Gene sequence:

>711_bases
GTGAACGTGCCGCGCGCAAAGCATGAGGTGGAGAGCGGAGCGCTCGGTGCGCTGGCTCCCGAGGATCTGGTCAGCCGCAT
CGCTACGGCCCTGTCCGAAGCCATCATCGGCGGGCGCTTTGCCCCCGGCGCCCGGCTCAACGAGGTGCATCTGGCCGCCG
AAATCGGCGTCTCCCGTGCGCCGCTGCGCGAGGCGGCGCGCCTGCTGGAAAACCGCGGGCTGGTGGTTTCCCAGCCGCGC
CGGGGCTTCTTCGTGCGCGATCTCACCGCCGCCGCGCTCGATGATGCCTACGACCTGCGCCTGTGCCTTGAACGCCATGC
GGGACTTGCGGTCTGCGCGACGCTCACCGCCGAAATGGCGGCGGCCCTCAGGACGCAGGCCGCGCGCATCCACGAAACCC
GCAGCGATCCCGGCCGGCAGGTAGAAGAGGACTTCGCCTTCCACCGCCTGATCTGCGCGCTCTCCGGCAATGCCCGGCTG
CTGCGTGTCTATGACGAACTCACCGACGAGATGCGTTTCGGCATCACGGTCATCGGCCATCTCTACGACGATGCGGACGT
GATCGCCCGCACCCACGATCCCGTGCTCGATGCGCTTCTCTCGCGCGACGGCGAGCGCTGGTGCGCGGCCATCGACCATC
ATATCGGTGTAGCGCGCGCGCATGTGGTCAAGCTCCTTGCCGCCCGCGAGAGCGAAGAATCGAAAGGCTGA

Upstream 100 bases:

>100_bases
GCGACATTTGACGGGCTTCATCGTAGGCACATAGATTTGAAACTGTCGACAATCGACGGTGTGGAAAATTTAAGCAGGCT
CTGCCTGCGACCAAACGAGG

Downstream 100 bases:

>100_bases
GGCCGCTCATCGCCCGGCATCCTTGAGCAGCGGCTCCAGCGCCTCGGCTGCAGCCAGCACCGCTCCGTCCGCGCCGCGGG
CGCCAACAATCTGGAAGGAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MNVPRAKHEVESGALGALAPEDLVSRIATALSEAIIGGRFAPGARLNEVHLAAEIGVSRAPLREAARLLENRGLVVSQPR
RGFFVRDLTAAALDDAYDLRLCLERHAGLAVCATLTAEMAAALRTQAARIHETRSDPGRQVEEDFAFHRLICALSGNARL
LRVYDELTDEMRFGITVIGHLYDDADVIARTHDPVLDALLSRDGERWCAAIDHHIGVARAHVVKLLAARESEESKG

Sequences:

>Translated_236_residues
MNVPRAKHEVESGALGALAPEDLVSRIATALSEAIIGGRFAPGARLNEVHLAAEIGVSRAPLREAARLLENRGLVVSQPR
RGFFVRDLTAAALDDAYDLRLCLERHAGLAVCATLTAEMAAALRTQAARIHETRSDPGRQVEEDFAFHRLICALSGNARL
LRVYDELTDEMRFGITVIGHLYDDADVIARTHDPVLDALLSRDGERWCAAIDHHIGVARAHVVKLLAARESEESKG
>Mature_236_residues
MNVPRAKHEVESGALGALAPEDLVSRIATALSEAIIGGRFAPGARLNEVHLAAEIGVSRAPLREAARLLENRGLVVSQPR
RGFFVRDLTAAALDDAYDLRLCLERHAGLAVCATLTAEMAAALRTQAARIHETRSDPGRQVEEDFAFHRLICALSGNARL
LRVYDELTDEMRFGITVIGHLYDDADVIARTHDPVLDALLSRDGERWCAAIDHHIGVARAHVVKLLAARESEESKG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994961, Length=209, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25693; Mature: 25693

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVPRAKHEVESGALGALAPEDLVSRIATALSEAIIGGRFAPGARLNEVHLAAEIGVSRA
CCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
PLREAARLLENRGLVVSQPRRGFFVRDLTAAALDDAYDLRLCLERHAGLAVCATLTAEMA
CHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHH
AALRTQAARIHETRSDPGRQVEEDFAFHRLICALSGNARLLRVYDELTDEMRFGITVIGH
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHH
LYDDADVIARTHDPVLDALLSRDGERWCAAIDHHIGVARAHVVKLLAARESEESKG
HHCCHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNVPRAKHEVESGALGALAPEDLVSRIATALSEAIIGGRFAPGARLNEVHLAAEIGVSRA
CCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
PLREAARLLENRGLVVSQPRRGFFVRDLTAAALDDAYDLRLCLERHAGLAVCATLTAEMA
CHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHH
AALRTQAARIHETRSDPGRQVEEDFAFHRLICALSGNARLLRVYDELTDEMRFGITVIGH
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHH
LYDDADVIARTHDPVLDALLSRDGERWCAAIDHHIGVARAHVVKLLAARESEESKG
HHCCHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]