| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is topA [H]
Identifier: 158423485
GI number: 158423485
Start: 2128797
End: 2131475
Strand: Reverse
Name: topA [H]
Synonym: AZC_1861
Alternate gene names: 158423485
Gene position: 2131475-2128797 (Counterclockwise)
Preceding gene: 158423486
Following gene: 158423483
Centisome position: 39.69
GC content: 68.46
Gene sequence:
>2679_bases ATGCAGGTCGTCATCGTCGAATCGCCGGCTAAGGCGAAGACGATCAACAAATATCTCGGACCAGGCTACGAGGTCATCGC GTCCTACGGGCACATCCGCGACCTTCCCTCCAAGGATGGATCGGTGGACCCGGAAGCGGACTTCCGGATGCTCTGGGAGG TTGATCCCAAGGCCCAGAAGCGGCTCAACGACATTGCCAAGGCGGTCAAGGTGGCTGACGGCCTGATCCTCGCCACCGAC CCGGATCGCGAAGGCGAGGCCATTTCCTGGCACGTGCTGGAAGTGCTGCGGGAGAAGAAGGCGCTGAAGGGCCAGAAGGT CGAGCGCGTCGTCTTCAACGCCATCACCAAGCAGGCCGTGCTGGAGGCCATGAAGGCCCCGCGCGCCGTGGACGTGGCGC TGGTGGACGCCTATCTCGCGCGCCGCGCGCTGGACTATCTCGTCGGCTTCACCCTTTCTCCCGTGCTGTGGCGCAAGCTG CCCGGCGCCCGCTCCGCCGGCCGCGTGCAGTCGGTGGCGCTGCGCCTCGTCTGCGACCGCGAGCGCGAGATCGAGCTGTT CGTCGCCAAGGAATACTGGTCGATCGCCGCGACGCTGGCGACGCCGCGCGGCGACACCTTCGAAGCCCGCCTGTCCGGGG CCGACGGCAAGAAGATCACCCGCCTCTCGGTGGGCACGGCCGAGGAGGCCGCCGCCTTCCGCGCGGCCCTCGACACGGCG GCCTTCAGCGTGCGCAACGTGGAAGCCAAGCCCGTGCGGCGCCATCCGCAGCCGCCGTTCACCACCTCGACGCTCCAGCA GGAGGCGAGCCGCAAGCTCGGCCTTGCGCCGGCCCGCACCATGCAGATCGCCCAGCGCCTCTACGAGGGCGTGGACATCG GCGGCGAAACGGCCGGTCTCATCACCTATATGCGAACCGACGGCGTGGACATGGCGCCGGAGGCCGTGACTGCCACGCGC AATGCCATCTCGGCGCAGTACGGCGCCCGCTACCTGCCCGGAACGCCGCGCAAATACACCACCAAGGCGAAGAATGCGCA GGAGGCCCACGAGGCCATCCGTCCGACCGACCCTTCGCGCCATCCGCGCGAAATGGCCCGCCATCTCGATGCGGAACAGG CCCGGCTCTACGAGCTGATCTGGACCCGCACGATCGCGAGCCAGATGGAATCGGCCGAGCTCGAACGCACCACCGCCGAC ATCATCGCCAAGGCCGCCGGCCGCGAGCTGGAGCTGACCGCCACCGGCACGGTGGTGAAGTTCGACGGCTTCCTGACCCT CTATCGCGAGGGCAAGGACGACGAGGACGATGACGAGGAGAGCCGCCGCCTGCCCGCCATGAGCGCCGGCGAAGCCCTCG ACAAGCGCGAGATCAAGACCGACCAGCACTTCACCGAACCGCCGCCGCGCTATTCGGAAGCCTCGCTCGTCAAGCGCATG GAGGAGCTCGGCATCGGCCGCCCCTCCACCTATGCCGCCGTGCTCGCGGTGCTGCGCGACCGCGAATATGTGAAGCTGGA AAAGAAGCGCCTCGTTCCCGAGGACAAGGGCCGGCTCGTCACCGCCTTCCTCCAGAGCTTCTTCAAGAAGTATGTGGAGT ACGACTTCACCGCCGACCTCGAGGAGAAGCTCGACGAGATCTCCGCCGCCGAGATCGACTGGAAGCAGGTGCTGCGCGAC TTCTGGAACGACTTCTCCTTGGCGGTGGACGCCACCAAGGAGCTGCGCGTCTCGCAGGTGATCGACGCCCTCGACGAGAT CCTGACCGCGCACCTCTTCCCGGCGAAGGAAGACGGCAGCGATCCGCGCCTGTGCCCGACCTGCGGCAGCGGCCGCCTGT CGCTCAAGATGGGTAAGTTCGGCGCTTTCATCGGCTGCTCGAACTATCCCGAATGCCGCTACACCCGCCCGCTCTCGGGC GGCGAGGGCGAAGCGGGCGGCGACGGCGTGCGCAAGCTCGGCACCGATCCCGAGACCGGCCTCGAAGTCACTCTGCGAGA CGGCCGTTTCGGCGCCTATCTCCAGCTCGGCGAGGCGGTGGACGGCGAGAAGCCCAAGCGCTCCAGCCTGCCCAAGGGCC TTGCTCCGGCGGACGTGGACCTGGAGACGGCGCTCGCGCTGCTGGCCCTGCCCCGCCGCGTCGGCACCCATCCGGAAGAT GGCGAACCCATCCTCGCCGGCATTGGCCGCTTCGGCCCCTATATCCAGCACGGCAAGGTCTACGCCAATCTGGAAGCGGC GGACGACGTGCTCACCGTCGGCCTGAACCGGGCCGTGGTGCTGTTGGCGGAGAAGCAGTCCCGCGGCCGCGGCGGTCGCG GCGCGGCGCCGGCCGGGCGCACGCTGGGCGATCACCCCACCGAAGGCGGGGCGATCACGGTGCGCGCGGGCCGCTTCGGG CCTTACGTGAACCACGGCAAGATCAACGCCACGCTGCCGAAGTCGCAGGATCCAGACAGCCTGACGCTGGAACAGGCTCT CGCCCTGATCGAAGCCAAGGCCGCCGCCTCCCCGAGCGCCCGCAAGCCGGCACGCAAGAGCGCGTCCGCCGACGGCGCTG CGAAGAAGGCCCCGGCCAAAAAGACTGCGACCAAGACCGCCGCCAAGAAGACCACCACCAAGGCTGCGGGGACGAAGAAG ACCGCCAAGGCCAAGGCGGACGCCGCGGCCGAGGAGTGA
Upstream 100 bases:
>100_bases GCCTGCCACGGGGGACGGGGGGATTTGACAGCCCAGCCATCGCCCCCCATGTTGCGACCGCCGCCAGGGGCCGCGGCGTT TCTCAAGAGATTGTTGTCCA
Downstream 100 bases:
>100_bases CGGGACAGGGCGTCGGCGCTATTCGCCGACGCCGACCACCCCGCCTTCTTCGGAGGTCTTTCGGACGCTCGTGCGCAACG GCTTCTGCTCCATGCTCATC
Product: DNA topoisomerase I
Products: NA
Alternate protein names: DNA topoisomerase I; Omega-protein; Relaxing enzyme; Swivelase; Untwisting enzyme [H]
Number of amino acids: Translated: 892; Mature: 892
Protein sequence:
>892_residues MQVVIVESPAKAKTINKYLGPGYEVIASYGHIRDLPSKDGSVDPEADFRMLWEVDPKAQKRLNDIAKAVKVADGLILATD PDREGEAISWHVLEVLREKKALKGQKVERVVFNAITKQAVLEAMKAPRAVDVALVDAYLARRALDYLVGFTLSPVLWRKL PGARSAGRVQSVALRLVCDREREIELFVAKEYWSIAATLATPRGDTFEARLSGADGKKITRLSVGTAEEAAAFRAALDTA AFSVRNVEAKPVRRHPQPPFTTSTLQQEASRKLGLAPARTMQIAQRLYEGVDIGGETAGLITYMRTDGVDMAPEAVTATR NAISAQYGARYLPGTPRKYTTKAKNAQEAHEAIRPTDPSRHPREMARHLDAEQARLYELIWTRTIASQMESAELERTTAD IIAKAAGRELELTATGTVVKFDGFLTLYREGKDDEDDDEESRRLPAMSAGEALDKREIKTDQHFTEPPPRYSEASLVKRM EELGIGRPSTYAAVLAVLRDREYVKLEKKRLVPEDKGRLVTAFLQSFFKKYVEYDFTADLEEKLDEISAAEIDWKQVLRD FWNDFSLAVDATKELRVSQVIDALDEILTAHLFPAKEDGSDPRLCPTCGSGRLSLKMGKFGAFIGCSNYPECRYTRPLSG GEGEAGGDGVRKLGTDPETGLEVTLRDGRFGAYLQLGEAVDGEKPKRSSLPKGLAPADVDLETALALLALPRRVGTHPED GEPILAGIGRFGPYIQHGKVYANLEAADDVLTVGLNRAVVLLAEKQSRGRGGRGAAPAGRTLGDHPTEGGAITVRAGRFG PYVNHGKINATLPKSQDPDSLTLEQALALIEAKAAASPSARKPARKSASADGAAKKAPAKKTATKTAAKKTTTKAAGTKK TAKAKADAAAEE
Sequences:
>Translated_892_residues MQVVIVESPAKAKTINKYLGPGYEVIASYGHIRDLPSKDGSVDPEADFRMLWEVDPKAQKRLNDIAKAVKVADGLILATD PDREGEAISWHVLEVLREKKALKGQKVERVVFNAITKQAVLEAMKAPRAVDVALVDAYLARRALDYLVGFTLSPVLWRKL PGARSAGRVQSVALRLVCDREREIELFVAKEYWSIAATLATPRGDTFEARLSGADGKKITRLSVGTAEEAAAFRAALDTA AFSVRNVEAKPVRRHPQPPFTTSTLQQEASRKLGLAPARTMQIAQRLYEGVDIGGETAGLITYMRTDGVDMAPEAVTATR NAISAQYGARYLPGTPRKYTTKAKNAQEAHEAIRPTDPSRHPREMARHLDAEQARLYELIWTRTIASQMESAELERTTAD IIAKAAGRELELTATGTVVKFDGFLTLYREGKDDEDDDEESRRLPAMSAGEALDKREIKTDQHFTEPPPRYSEASLVKRM EELGIGRPSTYAAVLAVLRDREYVKLEKKRLVPEDKGRLVTAFLQSFFKKYVEYDFTADLEEKLDEISAAEIDWKQVLRD FWNDFSLAVDATKELRVSQVIDALDEILTAHLFPAKEDGSDPRLCPTCGSGRLSLKMGKFGAFIGCSNYPECRYTRPLSG GEGEAGGDGVRKLGTDPETGLEVTLRDGRFGAYLQLGEAVDGEKPKRSSLPKGLAPADVDLETALALLALPRRVGTHPED GEPILAGIGRFGPYIQHGKVYANLEAADDVLTVGLNRAVVLLAEKQSRGRGGRGAAPAGRTLGDHPTEGGAITVRAGRFG PYVNHGKINATLPKSQDPDSLTLEQALALIEAKAAASPSARKPARKSASADGAAKKAPAKKTATKTAAKKTTTKAAGTKK TAKAKADAAAEE >Mature_892_residues MQVVIVESPAKAKTINKYLGPGYEVIASYGHIRDLPSKDGSVDPEADFRMLWEVDPKAQKRLNDIAKAVKVADGLILATD PDREGEAISWHVLEVLREKKALKGQKVERVVFNAITKQAVLEAMKAPRAVDVALVDAYLARRALDYLVGFTLSPVLWRKL PGARSAGRVQSVALRLVCDREREIELFVAKEYWSIAATLATPRGDTFEARLSGADGKKITRLSVGTAEEAAAFRAALDTA AFSVRNVEAKPVRRHPQPPFTTSTLQQEASRKLGLAPARTMQIAQRLYEGVDIGGETAGLITYMRTDGVDMAPEAVTATR NAISAQYGARYLPGTPRKYTTKAKNAQEAHEAIRPTDPSRHPREMARHLDAEQARLYELIWTRTIASQMESAELERTTAD IIAKAAGRELELTATGTVVKFDGFLTLYREGKDDEDDDEESRRLPAMSAGEALDKREIKTDQHFTEPPPRYSEASLVKRM EELGIGRPSTYAAVLAVLRDREYVKLEKKRLVPEDKGRLVTAFLQSFFKKYVEYDFTADLEEKLDEISAAEIDWKQVLRD FWNDFSLAVDATKELRVSQVIDALDEILTAHLFPAKEDGSDPRLCPTCGSGRLSLKMGKFGAFIGCSNYPECRYTRPLSG GEGEAGGDGVRKLGTDPETGLEVTLRDGRFGAYLQLGEAVDGEKPKRSSLPKGLAPADVDLETALALLALPRRVGTHPED GEPILAGIGRFGPYIQHGKVYANLEAADDVLTVGLNRAVVLLAEKQSRGRGGRGAAPAGRTLGDHPTEGGAITVRAGRFG PYVNHGKINATLPKSQDPDSLTLEQALALIEAKAAASPSARKPARKSASADGAAKKAPAKKTATKTAAKKTTTKAAGTKK TAKAKADAAAEE
Specific function: The reaction catalyzed by topoisomerases leads to the conversion of one topological isomer of DNA to another [H]
COG id: COG0550
COG function: function code L; Topoisomerase IA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Homo sapiens, GI10835218, Length=615, Percent_Identity=25.8536585365854, Blast_Score=124, Evalue=4e-28, Organism=Homo sapiens, GI4507635, Length=654, Percent_Identity=26.1467889908257, Blast_Score=105, Evalue=2e-22, Organism=Escherichia coli, GI1787529, Length=666, Percent_Identity=39.6396396396396, Blast_Score=458, Evalue=1e-130, Organism=Escherichia coli, GI1788061, Length=644, Percent_Identity=25.6211180124224, Blast_Score=140, Evalue=4e-34, Organism=Caenorhabditis elegans, GI32563869, Length=571, Percent_Identity=24.6935201401051, Blast_Score=112, Evalue=9e-25, Organism=Caenorhabditis elegans, GI17555378, Length=473, Percent_Identity=25.5813953488372, Blast_Score=110, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6323263, Length=505, Percent_Identity=25.5445544554455, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24585251, Length=598, Percent_Identity=26.4214046822742, Blast_Score=145, Evalue=2e-34, Organism=Drosophila melanogaster, GI24640096, Length=583, Percent_Identity=24.1852487135506, Blast_Score=105, Evalue=1e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003601 - InterPro: IPR013497 - InterPro: IPR013824 - InterPro: IPR013825 - InterPro: IPR000380 - InterPro: IPR003602 - InterPro: IPR013498 - InterPro: IPR005733 - InterPro: IPR006171 [H]
Pfam domain/function: PF01131 Topoisom_bac; PF01751 Toprim; PF01396 zf-C4_Topoisom [H]
EC number: =5.99.1.2 [H]
Molecular weight: Translated: 96989; Mature: 96989
Theoretical pI: Translated: 8.97; Mature: 8.97
Prosite motif: PS00396 TOPOISOMERASE_I_PROK
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQVVIVESPAKAKTINKYLGPGYEVIASYGHIRDLPSKDGSVDPEADFRMLWEVDPKAQK CEEEEECCCCHHHHHHHHHCCCHHHHHHCCHHHCCCCCCCCCCCCCCEEEEEECCHHHHH RLNDIAKAVKVADGLILATDPDREGEAISWHVLEVLREKKALKGQKVERVVFNAITKQAV HHHHHHHHHHHHCCEEEEECCCCCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LEAMKAPRAVDVALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC EREIELFVAKEYWSIAATLATPRGDTFEARLSGADGKKITRLSVGTAEEAAAFRAALDTA CCCEEEEEEHHHHHEEHEEECCCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHH AFSVRNVEAKPVRRHPQPPFTTSTLQQEASRKLGLAPARTMQIAQRLYEGVDIGGETAGL HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCE ITYMRTDGVDMAPEAVTATRNAISAQYGARYLPGTPRKYTTKAKNAQEAHEAIRPTDPSR EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC HPREMARHLDAEQARLYELIWTRTIASQMESAELERTTADIIAKAAGRELELTATGTVVK CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEE FDGFLTLYREGKDDEDDDEESRRLPAMSAGEALDKREIKTDQHFTEPPPRYSEASLVKRM ECCEEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH EELGIGRPSTYAAVLAVLRDREYVKLEKKRLVPEDKGRLVTAFLQSFFKKYVEYDFTADL HHHCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH EEKLDEISAAEIDWKQVLRDFWNDFSLAVDATKELRVSQVIDALDEILTAHLFPAKEDGS HHHHHHHHHCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC DPRLCPTCGSGRLSLKMGKFGAFIGCSNYPECRYTRPLSGGEGEAGGDGVRKLGTDPETG CCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCEECCCCCCCCCCCCCHHHHCCCCCCCC LEVTLRDGRFGAYLQLGEAVDGEKPKRSSLPKGLAPADVDLETALALLALPRRVGTHPED CEEEEECCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC GEPILAGIGRFGPYIQHGKVYANLEAADDVLTVGLNRAVVLLAEKQSRGRGGRGAAPAGR CCHHHHHHHHHCCHHHCCEEEEECCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCC TLGDHPTEGGAITVRAGRFGPYVNHGKINATLPKSQDPDSLTLEQALALIEAKAAASPSA CCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC RKPARKSASADGAAKKAPAKKTATKTAAKKTTTKAAGTKKTAKAKADAAAEE CCCCHHCCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC >Mature Secondary Structure MQVVIVESPAKAKTINKYLGPGYEVIASYGHIRDLPSKDGSVDPEADFRMLWEVDPKAQK CEEEEECCCCHHHHHHHHHCCCHHHHHHCCHHHCCCCCCCCCCCCCCEEEEEECCHHHHH RLNDIAKAVKVADGLILATDPDREGEAISWHVLEVLREKKALKGQKVERVVFNAITKQAV HHHHHHHHHHHHCCEEEEECCCCCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LEAMKAPRAVDVALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC EREIELFVAKEYWSIAATLATPRGDTFEARLSGADGKKITRLSVGTAEEAAAFRAALDTA CCCEEEEEEHHHHHEEHEEECCCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHH AFSVRNVEAKPVRRHPQPPFTTSTLQQEASRKLGLAPARTMQIAQRLYEGVDIGGETAGL HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCE ITYMRTDGVDMAPEAVTATRNAISAQYGARYLPGTPRKYTTKAKNAQEAHEAIRPTDPSR EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC HPREMARHLDAEQARLYELIWTRTIASQMESAELERTTADIIAKAAGRELELTATGTVVK CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEE FDGFLTLYREGKDDEDDDEESRRLPAMSAGEALDKREIKTDQHFTEPPPRYSEASLVKRM ECCEEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH EELGIGRPSTYAAVLAVLRDREYVKLEKKRLVPEDKGRLVTAFLQSFFKKYVEYDFTADL HHHCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH EEKLDEISAAEIDWKQVLRDFWNDFSLAVDATKELRVSQVIDALDEILTAHLFPAKEDGS HHHHHHHHHCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC DPRLCPTCGSGRLSLKMGKFGAFIGCSNYPECRYTRPLSGGEGEAGGDGVRKLGTDPETG CCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCEECCCCCCCCCCCCCHHHHCCCCCCCC LEVTLRDGRFGAYLQLGEAVDGEKPKRSSLPKGLAPADVDLETALALLALPRRVGTHPED CEEEEECCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC GEPILAGIGRFGPYIQHGKVYANLEAADDVLTVGLNRAVVLLAEKQSRGRGGRGAAPAGR CCHHHHHHHHHCCHHHCCEEEEECCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCC TLGDHPTEGGAITVRAGRFGPYVNHGKINATLPKSQDPDSLTLEQALALIEAKAAASPSA CCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC RKPARKSASADGAAKKAPAKKTATKTAAKKTTTKAAGTKKTAKAKADAAAEE CCCCHHCCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA