Click here to switch to the map view.

The map label for this gene is potD [C]

Identifier: 158423426

GI number: 158423426

Start: 2063078

End: 2064124

Strand: Reverse

Name: potD [C]

Synonym: AZC_1802

Alternate gene names: 158423426

Gene position: 2064124-2063078 (Counterclockwise)

Preceding gene: 158423427

Following gene: 158423425

Centisome position: 38.44

GC content: 65.43

Gene sequence:

>1047_bases
ATGACGACGTCTGCGAAGTTCGGGGCCGCTGCGGCGCTCGCCCTCGGTCTCTTCTCTCAGGCCGCCTGGGCCGAGAGCAA
CATCACCGTCATGGCCTATTCGGGCCTGTTCCAGGAGCGTTACACGAAGGCCGTGATCGAGCCCTTCATGAAGGCGCATC
CGGATATCAAGGTCACCTATTTCCCCCTGCCCTCCTCCGCCGCCATGCTCGGCAACCTGCGTGCCCAGAAGGCCGCGCCG
CAGACCGACGTCGCCATCATGGACGTCTCGGTCTCGAAGGCCGGCACCGACGAGGGCCTCTTCACCAAGATCGACGAGAC
CAACGCGCCCAACGTGAAGGATCTCTATCCCAACGCCCGCATTCCGGACGTGGCGGGCGTCGCGGTGACCTTCGACAACC
TCGTCATGCTCTACAACACCGATCAGGTGAAGGAGCCGCCGAAGTCCTGGATGGCCATGGCGGACAAGGGCTATGCGGGC
AAGGTGGTGATCCCCGGCATGCCCGACATCCAGGGCCTCTCGCTGGTCATCATCCTCAACAAGGCGAACGGCGGCACGGA
CTATCTGAAGGACGTGAGCAAGGGCATCGCGGCCATGGTCGAGATCGCCCCCAATGTCCAGACGTGGGAGCCCAAGCCCG
AGGTCTATGCGCCCATCGTCACGGGGCAGGCCGCCGTCGGCGCCGGCTGGAACGCCCGCGCGCAGGTCAACAGCCAGACC
TCCGGCGGCAAGCTCAAGGCCACGATCCCGCAGGAAGGCACGGTGTTCCAGATCAACACCATCAACCTCGTGGCCAACGG
CCCCGGCGGCGATGCGGCCAAGACCTTCGTGAACTATGCCCTGAGCCCCGAGGCCCAGAAGGCCTTCACAGAGAGCATGT
TCTACGCCCCCACCAACGCCAAGGCGGACATCTCGCCGGAAGCGCTCGACCGCACCGCCGTGAAGTTCATGGACAAGGTG
ATCCCGGTGGACTGGATCGCGCTTGCCAAGGTGCGTGACGCCATCGGCGAACAGTGGCGCCGCCGCGTGCTGCCCGCCAG
CCGGTGA

Upstream 100 bases:

>100_bases
ACATGAGGGCGGCTGAGCCAACACTCAGCCGCCCGGCCGTCACCATGAAACCGAGGCTGGACCACCGGCCCGTCCCACAC
CTTTTCCAGAGGGGATCCAC

Downstream 100 bases:

>100_bases
GGCGCATGGCCATGATCCGCACCTCGCCCGACGAGATCCAGCGCCAGACGCAGGGCGAGGGCTTCCTCTCCCTGCGCGGC
CTCACCCGCCGCTACGGCAC

Product: ABC opine/polyamine transporter periplasmic binding protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: Spermidine/Putrescine ABC Transporter; ABC Transporter; PotD-A

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MTTSAKFGAAAALALGLFSQAAWAESNITVMAYSGLFQERYTKAVIEPFMKAHPDIKVTYFPLPSSAAMLGNLRAQKAAP
QTDVAIMDVSVSKAGTDEGLFTKIDETNAPNVKDLYPNARIPDVAGVAVTFDNLVMLYNTDQVKEPPKSWMAMADKGYAG
KVVIPGMPDIQGLSLVIILNKANGGTDYLKDVSKGIAAMVEIAPNVQTWEPKPEVYAPIVTGQAAVGAGWNARAQVNSQT
SGGKLKATIPQEGTVFQINTINLVANGPGGDAAKTFVNYALSPEAQKAFTESMFYAPTNAKADISPEALDRTAVKFMDKV
IPVDWIALAKVRDAIGEQWRRRVLPASR

Sequences:

>Translated_348_residues
MTTSAKFGAAAALALGLFSQAAWAESNITVMAYSGLFQERYTKAVIEPFMKAHPDIKVTYFPLPSSAAMLGNLRAQKAAP
QTDVAIMDVSVSKAGTDEGLFTKIDETNAPNVKDLYPNARIPDVAGVAVTFDNLVMLYNTDQVKEPPKSWMAMADKGYAG
KVVIPGMPDIQGLSLVIILNKANGGTDYLKDVSKGIAAMVEIAPNVQTWEPKPEVYAPIVTGQAAVGAGWNARAQVNSQT
SGGKLKATIPQEGTVFQINTINLVANGPGGDAAKTFVNYALSPEAQKAFTESMFYAPTNAKADISPEALDRTAVKFMDKV
IPVDWIALAKVRDAIGEQWRRRVLPASR
>Mature_347_residues
TTSAKFGAAAALALGLFSQAAWAESNITVMAYSGLFQERYTKAVIEPFMKAHPDIKVTYFPLPSSAAMLGNLRAQKAAPQ
TDVAIMDVSVSKAGTDEGLFTKIDETNAPNVKDLYPNARIPDVAGVAVTFDNLVMLYNTDQVKEPPKSWMAMADKGYAGK
VVIPGMPDIQGLSLVIILNKANGGTDYLKDVSKGIAAMVEIAPNVQTWEPKPEVYAPIVTGQAAVGAGWNARAQVNSQTS
GGKLKATIPQEGTVFQINTINLVANGPGGDAAKTFVNYALSPEAQKAFTESMFYAPTNAKADISPEALDRTAVKFMDKVI
PVDWIALAKVRDAIGEQWRRRVLPASR

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37228; Mature: 37097

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSAKFGAAAALALGLFSQAAWAESNITVMAYSGLFQERYTKAVIEPFMKAHPDIKVTY
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEE
FPLPSSAAMLGNLRAQKAAPQTDVAIMDVSVSKAGTDEGLFTKIDETNAPNVKDLYPNAR
EECCCCHHHHHCHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCHHCCCCCC
IPDVAGVAVTFDNLVMLYNTDQVKEPPKSWMAMADKGYAGKVVIPGMPDIQGLSLVIILN
CCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEEE
KANGGTDYLKDVSKGIAAMVEIAPNVQTWEPKPEVYAPIVTGQAAVGAGWNARAQVNSQT
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCEECCCCCCEEEECCCC
SGGKLKATIPQEGTVFQINTINLVANGPGGDAAKTFVNYALSPEAQKAFTESMFYAPTNA
CCCEEEEECCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHEEECCCCC
KADISPEALDRTAVKFMDKVIPVDWIALAKVRDAIGEQWRRRVLPASR
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TTSAKFGAAAALALGLFSQAAWAESNITVMAYSGLFQERYTKAVIEPFMKAHPDIKVTY
CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEE
FPLPSSAAMLGNLRAQKAAPQTDVAIMDVSVSKAGTDEGLFTKIDETNAPNVKDLYPNAR
EECCCCHHHHHCHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCHHCCCCCC
IPDVAGVAVTFDNLVMLYNTDQVKEPPKSWMAMADKGYAGKVVIPGMPDIQGLSLVIILN
CCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEEE
KANGGTDYLKDVSKGIAAMVEIAPNVQTWEPKPEVYAPIVTGQAAVGAGWNARAQVNSQT
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCEECCCCCCEEEECCCC
SGGKLKATIPQEGTVFQINTINLVANGPGGDAAKTFVNYALSPEAQKAFTESMFYAPTNA
CCCEEEEECCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHEEECCCCC
KADISPEALDRTAVKFMDKVIPVDWIALAKVRDAIGEQWRRRVLPASR
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA