| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is arnT [H]
Identifier: 158423204
GI number: 158423204
Start: 1803595
End: 1805385
Strand: Direct
Name: arnT [H]
Synonym: AZC_1580
Alternate gene names: 158423204
Gene position: 1803595-1805385 (Clockwise)
Preceding gene: 158423203
Following gene: 158423205
Centisome position: 33.59
GC content: 68.34
Gene sequence:
>1791_bases TTGCCGGCCCGGCGTTTCTGCTATTGTCCGCGCCGAATTCGACCTGGGTCCGCATCACGCATGGCTATCACCGCACCGGC GTCCACGACGCGCCGGCCTTTGGCATTGGAATTGGCGCATCGGCTGTCCCGCGGCTTTGATGCCGCCGCCGGCAGCCATG TGCGCGCCTGCGCGCTGCTTCTCATCGTGACCCTCGTGGCCTTCCTGCCCGGCCTTGGTTCCATCTCGCCCATCGACCGG GACGAGGCCCGCTTTGCCCAGGCCAGCAAGCAGATGCTGGAGAGCGGCAATTACGTGGACATCCGCTTCAAGGAGGATGT CCGCTACAAGAAGCCGGTCGGCATCCACTGGCTGCAGGTGGCCAGCGTCTCCGTCGGCGAGGCCCTCGTCGGCCCCTCGG CCCGCACCACCATCGCCTTCTACCGCATCCCCTCGCTGCTCGGCGCCATCGGCGCGGTGCTGCTCACCTACTGGACGGCG CTCGCTTTCGTCGGCCGGCGCGGCGCGCTGCTCGCCGGGCTCATGATGGCGAGCTGCGTGCTGCTCGGCATCGAGGCGCG CCTTGCCAAGACCGATGCGGTGCTCCTCTTCACCGTGCTCGCCTCCATGGGCGTATTGGCTCGCTCATGGATGGCGGCCC CCGACGTGAAGCGCCTGTCGTTCGGCCTGTCCGCGATCTTCTGGACCGGCCTTGCCGGCGGCATCCTCATCAAGGGGCCG ATGGCGCCGCTCTTCGTGGGCCTGCCCATCGTCGTGCTCGCCATCATGGAGCGCTCGGGCCGGATCTTCACCCGTTTGCG GCCGCTGCCCGGCATCCTGTGGTGCCTGCTGCTGGTGCTGCCGTGGTTCGTGGCCATCTATTACGTCACCAACGGCCAGT TCTATAAGCTCGCCGTGGGCGTCGACATGCTCGGCAAGGTGACTGAAGGGCAGGAAGGCCACTGGGCCCCGCCCGGCACC TATCTTCTGGCCATCTGGGGCACCTTCTGGCCGTCCATCGTGCTGGCGGTGATGGCGCTGCCCTTTGCGTGGCGGATGCG CCGCGAGCGGGCGGTGCGCTTCCTGCTGGCCTGGATCGTGCCGACCTGGATCGTGTTCGAGATCACAGCCACCAAGCTGC CGCACTATGTGCTGCCGCTCTATCCGGCCCTCGCCATCCTGACGGCCCTTGCCTTCGAGCGCGGCAACCTCTCGGCCGGG CGGCGCCTCGCGCCGCTCGTATGGCTGTGGCCGGTCATGGGCACCCTGCTGGTGGGCGCGCTGGTGTTCGGCTTTGTCAT GCTCGGGCAGGGGCTGGCTCTGCTCGCCTGGCCCTTCATGGCGCTGGCCCTCGTTCTGCTGGTCTTCGCCGCCCGCGTTC TGCCGGAGGCGGGTCCGCAGCCGGCCTTCCTCATCGCGGTCGCCGGTGCGCTGGCACTCTACATCGGCGTCTTCCAGGGG CTGATGCCGCAACTGCGCGGCGTGTGGATCTCCGAGCGCCTCGCCGCCATCGCCCGCGACAGCGGGTGTCCGGCGGACCG TATCGCTACCGTGCCCTATCAGGAGCCGAGCCTCGCCTTCCTCGCCGGCACCAATATCCGCTTCACCGGACCGGATGGCG CGGCCGACCTGATGAAGGAAGGCGGCTGCGCGCTCGCCTTCATCGGCAAGCCCATGCTGCCCTTCTTCGAGGCACGGTCG AAGGCCATTGGCGTCGAACCGAAGCTGCTCGAGCGGGTCGACGGCTTTGCCTATAACGGCGGGCGGATGCAGGAGATTTC CGTCTTCCGGGCACCGGAGCGCACCCCGTGA
Upstream 100 bases:
>100_bases CTTCCTCCCATACCGGTGGGGCAGGCCCTGCGCCGCCCCCACATCACCTGCGGCCATCCGGCCTTGCGGGGGCCATCTTT GCGCCACCTTTGCACGGCCT
Downstream 100 bases:
>100_bases GCGAGACGGCCGCGACGCCCCCGCAGCCTTCGCTCTGGCAGGAGGAGGTGCGCGCGACGCTCCACGGCGTCGGCGCCGCA TGGCAGATGCTGCGCACCCG
Product: glycosyltransferase
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 596; Mature: 595
Protein sequence:
>596_residues MPARRFCYCPRRIRPGSASRMAITAPASTTRRPLALELAHRLSRGFDAAAGSHVRACALLLIVTLVAFLPGLGSISPIDR DEARFAQASKQMLESGNYVDIRFKEDVRYKKPVGIHWLQVASVSVGEALVGPSARTTIAFYRIPSLLGAIGAVLLTYWTA LAFVGRRGALLAGLMMASCVLLGIEARLAKTDAVLLFTVLASMGVLARSWMAAPDVKRLSFGLSAIFWTGLAGGILIKGP MAPLFVGLPIVVLAIMERSGRIFTRLRPLPGILWCLLLVLPWFVAIYYVTNGQFYKLAVGVDMLGKVTEGQEGHWAPPGT YLLAIWGTFWPSIVLAVMALPFAWRMRRERAVRFLLAWIVPTWIVFEITATKLPHYVLPLYPALAILTALAFERGNLSAG RRLAPLVWLWPVMGTLLVGALVFGFVMLGQGLALLAWPFMALALVLLVFAARVLPEAGPQPAFLIAVAGALALYIGVFQG LMPQLRGVWISERLAAIARDSGCPADRIATVPYQEPSLAFLAGTNIRFTGPDGAADLMKEGGCALAFIGKPMLPFFEARS KAIGVEPKLLERVDGFAYNGGRMQEISVFRAPERTP
Sequences:
>Translated_596_residues MPARRFCYCPRRIRPGSASRMAITAPASTTRRPLALELAHRLSRGFDAAAGSHVRACALLLIVTLVAFLPGLGSISPIDR DEARFAQASKQMLESGNYVDIRFKEDVRYKKPVGIHWLQVASVSVGEALVGPSARTTIAFYRIPSLLGAIGAVLLTYWTA LAFVGRRGALLAGLMMASCVLLGIEARLAKTDAVLLFTVLASMGVLARSWMAAPDVKRLSFGLSAIFWTGLAGGILIKGP MAPLFVGLPIVVLAIMERSGRIFTRLRPLPGILWCLLLVLPWFVAIYYVTNGQFYKLAVGVDMLGKVTEGQEGHWAPPGT YLLAIWGTFWPSIVLAVMALPFAWRMRRERAVRFLLAWIVPTWIVFEITATKLPHYVLPLYPALAILTALAFERGNLSAG RRLAPLVWLWPVMGTLLVGALVFGFVMLGQGLALLAWPFMALALVLLVFAARVLPEAGPQPAFLIAVAGALALYIGVFQG LMPQLRGVWISERLAAIARDSGCPADRIATVPYQEPSLAFLAGTNIRFTGPDGAADLMKEGGCALAFIGKPMLPFFEARS KAIGVEPKLLERVDGFAYNGGRMQEISVFRAPERTP >Mature_595_residues PARRFCYCPRRIRPGSASRMAITAPASTTRRPLALELAHRLSRGFDAAAGSHVRACALLLIVTLVAFLPGLGSISPIDRD EARFAQASKQMLESGNYVDIRFKEDVRYKKPVGIHWLQVASVSVGEALVGPSARTTIAFYRIPSLLGAIGAVLLTYWTAL AFVGRRGALLAGLMMASCVLLGIEARLAKTDAVLLFTVLASMGVLARSWMAAPDVKRLSFGLSAIFWTGLAGGILIKGPM APLFVGLPIVVLAIMERSGRIFTRLRPLPGILWCLLLVLPWFVAIYYVTNGQFYKLAVGVDMLGKVTEGQEGHWAPPGTY LLAIWGTFWPSIVLAVMALPFAWRMRRERAVRFLLAWIVPTWIVFEITATKLPHYVLPLYPALAILTALAFERGNLSAGR RLAPLVWLWPVMGTLLVGALVFGFVMLGQGLALLAWPFMALALVLLVFAARVLPEAGPQPAFLIAVAGALALYIGVFQGL MPQLRGVWISERLAAIARDSGCPADRIATVPYQEPSLAFLAGTNIRFTGPDGAADLMKEGGCALAFIGKPMLPFFEARSK AIGVEPKLLERVDGFAYNGGRMQEISVFRAPERTP
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=321, Percent_Identity=26.1682242990654, Blast_Score=76, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 64711; Mature: 64580
Theoretical pI: Translated: 10.63; Mature: 10.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPARRFCYCPRRIRPGSASRMAITAPASTTRRPLALELAHRLSRGFDAAAGSHVRACALL CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH LIVTLVAFLPGLGSISPIDRDEARFAQASKQMLESGNYVDIRFKEDVRYKKPVGIHWLQV HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEHEE ASVSVGEALVGPSARTTIAFYRIPSLLGAIGAVLLTYWTALAFVGRRGALLAGLMMASCV HHHHHCHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LLGIEARLAKTDAVLLFTVLASMGVLARSWMAAPDVKRLSFGLSAIFWTGLAGGILIKGP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECC MAPLFVGLPIVVLAIMERSGRIFTRLRPLPGILWCLLLVLPWFVAIYYVTNGQFYKLAVG CHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCEEEEEEC VDMLGKVTEGQEGHWAPPGTYLLAIWGTFWPSIVLAVMALPFAWRMRRERAVRFLLAWIV HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PTWIVFEITATKLPHYVLPLYPALAILTALAFERGNLSAGRRLAPLVWLWPVMGTLLVGA HHHHHEEEHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH LVFGFVMLGQGLALLAWPFMALALVLLVFAARVLPEAGPQPAFLIAVAGALALYIGVFQG HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH LMPQLRGVWISERLAAIARDSGCPADRIATVPYQEPSLAFLAGTNIRFTGPDGAADLMKE HHHHHHCHHHHHHHHHHHHCCCCCHHHEEECCCCCCCEEEEECCEEEEECCCCHHHHHHC GGCALAFIGKPMLPFFEARSKAIGVEPKLLERVDGFAYNGGRMQEISVFRAPERTP CCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHCCCEECCCCEEEEEEECCCCCCC >Mature Secondary Structure PARRFCYCPRRIRPGSASRMAITAPASTTRRPLALELAHRLSRGFDAAAGSHVRACALL CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH LIVTLVAFLPGLGSISPIDRDEARFAQASKQMLESGNYVDIRFKEDVRYKKPVGIHWLQV HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEHEE ASVSVGEALVGPSARTTIAFYRIPSLLGAIGAVLLTYWTALAFVGRRGALLAGLMMASCV HHHHHCHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LLGIEARLAKTDAVLLFTVLASMGVLARSWMAAPDVKRLSFGLSAIFWTGLAGGILIKGP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECC MAPLFVGLPIVVLAIMERSGRIFTRLRPLPGILWCLLLVLPWFVAIYYVTNGQFYKLAVG CHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCEEEEEEC VDMLGKVTEGQEGHWAPPGTYLLAIWGTFWPSIVLAVMALPFAWRMRRERAVRFLLAWIV HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PTWIVFEITATKLPHYVLPLYPALAILTALAFERGNLSAGRRLAPLVWLWPVMGTLLVGA HHHHHEEEHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH LVFGFVMLGQGLALLAWPFMALALVLLVFAARVLPEAGPQPAFLIAVAGALALYIGVFQG HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH LMPQLRGVWISERLAAIARDSGCPADRIATVPYQEPSLAFLAGTNIRFTGPDGAADLMKE HHHHHHCHHHHHHHHHHHHCCCCCHHHEEECCCCCCCEEEEECCEEEEECCCCHHHHHHC GGCALAFIGKPMLPFFEARSKAIGVEPKLLERVDGFAYNGGRMQEISVFRAPERTP CCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHCCCEECCCCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA