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The map label for this gene is gntR [H]

Identifier: 158423141

GI number: 158423141

Start: 1726429

End: 1727151

Strand: Direct

Name: gntR [H]

Synonym: AZC_1517

Alternate gene names: 158423141

Gene position: 1726429-1727151 (Clockwise)

Preceding gene: 158423140

Following gene: 158423144

Centisome position: 32.15

GC content: 68.88

Gene sequence:

>723_bases
TTGTCCTCCATGTCCGGTCCCCTGCCAGAGGCTGTCACGGCCCCTCCCGCTCAACGCCCCCGCCGGCGCCGCACCGCCAG
CCGGGCGGTAACGCGCACGGAGGAACTGCGTCTCCAGATCGCGGATGACATCGTGCGCGGCCGGATTCCGCCGGGCACCG
CGCTGGAGGAGATGGAGGTCGCCAAGCGCTATGGCGTCTCGCGCACGCCGGTGCGTGAGGTGATCCGGGATCTCGCCGCC
TCAGGCCTCGTGGAGACACGCCCGCACCGTAGCGCGCTGGTGGCCAAGCCCTCGCTCGATCGCCTGCGCGGCATGTTCGA
CGTGATGGCGGAACTGGAGGCCCTGTGCGCCGGCCTCTGCGCCGTGCATATGACCAAGGCCGAGCGGGGGCAGCTGGAAG
CGATCCACGCGGAACTGGCTGACCTGACCCGGCGGGGCGACGAGGCCAACTACACCTTCCTCAACGACCGTTTCCACACC
TTCCTCTATGGGGGTGCGCACAACGCCTATCTGGCGGAGATCACCCTCGCCACCCGCGCCCGCCTTCAGCCCTTCCGCCG
CGCCCAGTTCCGCAACCTCGGCCGCCTTGCGCTCTCTTATGCGGAGCATGACACCGTCGTGCAGGCGATCCTGCGAGGTG
ACAAGGCAGAAGCGGCCAGCGCCATGCGCAGCCACATCCTGACCGTGGAAGTCGCCTACGAGCGCTATGCGGAAGGGGTG
TGA

Upstream 100 bases:

>100_bases
TGCGCCTTCCCGTCGGCTGGCGGGTGGTGGCGGCCCATGTGAGCGTCATTGCCGAGCCGATTGCGTAACGCGTTTTCACC
TGCCTGCGAGTGCTTTAGCC

Downstream 100 bases:

>100_bases
GGGGCGCTCGGATGGCGCCCCTTGTCCTTACGCCGGCTTGCGGAGGATCAGCACATCCTGGAAGGTCGGGAAGCGACGTC
GTACGTCGGCGATTTCGAAG

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSSMSGPLPEAVTAPPAQRPRRRRTASRAVTRTEELRLQIADDIVRGRIPPGTALEEMEVAKRYGVSRTPVREVIRDLAA
SGLVETRPHRSALVAKPSLDRLRGMFDVMAELEALCAGLCAVHMTKAERGQLEAIHAELADLTRRGDEANYTFLNDRFHT
FLYGGAHNAYLAEITLATRARLQPFRRAQFRNLGRLALSYAEHDTVVQAILRGDKAEAASAMRSHILTVEVAYERYAEGV

Sequences:

>Translated_240_residues
MSSMSGPLPEAVTAPPAQRPRRRRTASRAVTRTEELRLQIADDIVRGRIPPGTALEEMEVAKRYGVSRTPVREVIRDLAA
SGLVETRPHRSALVAKPSLDRLRGMFDVMAELEALCAGLCAVHMTKAERGQLEAIHAELADLTRRGDEANYTFLNDRFHT
FLYGGAHNAYLAEITLATRARLQPFRRAQFRNLGRLALSYAEHDTVVQAILRGDKAEAASAMRSHILTVEVAYERYAEGV
>Mature_239_residues
SSMSGPLPEAVTAPPAQRPRRRRTASRAVTRTEELRLQIADDIVRGRIPPGTALEEMEVAKRYGVSRTPVREVIRDLAAS
GLVETRPHRSALVAKPSLDRLRGMFDVMAELEALCAGLCAVHMTKAERGQLEAIHAELADLTRRGDEANYTFLNDRFHTF
LYGGAHNAYLAEITLATRARLQPFRRAQFRNLGRLALSYAEHDTVVQAILRGDKAEAASAMRSHILTVEVAYERYAEGV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=186, Percent_Identity=30.6451612903226, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082149, Length=204, Percent_Identity=28.921568627451, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26662; Mature: 26531

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSMSGPLPEAVTAPPAQRPRRRRTASRAVTRTEELRLQIADDIVRGRIPPGTALEEMEV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AKRYGVSRTPVREVIRDLAASGLVETRPHRSALVAKPSLDRLRGMFDVMAELEALCAGLC
HHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHH
AVHMTKAERGQLEAIHAELADLTRRGDEANYTFLNDRFHTFLYGGAHNAYLAEITLATRA
HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHH
RLQPFRRAQFRNLGRLALSYAEHDTVVQAILRGDKAEAASAMRSHILTVEVAYERYAEGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSMSGPLPEAVTAPPAQRPRRRRTASRAVTRTEELRLQIADDIVRGRIPPGTALEEMEV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AKRYGVSRTPVREVIRDLAASGLVETRPHRSALVAKPSLDRLRGMFDVMAELEALCAGLC
HHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHH
AVHMTKAERGQLEAIHAELADLTRRGDEANYTFLNDRFHTFLYGGAHNAYLAEITLATRA
HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHH
RLQPFRRAQFRNLGRLALSYAEHDTVVQAILRGDKAEAASAMRSHILTVEVAYERYAEGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]