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The map label for this gene is yckA [H]

Identifier: 158423074

GI number: 158423074

Start: 1650677

End: 1651318

Strand: Direct

Name: yckA [H]

Synonym: AZC_1450

Alternate gene names: 158423074

Gene position: 1650677-1651318 (Clockwise)

Preceding gene: 158423073

Following gene: 158423075

Centisome position: 30.74

GC content: 65.11

Gene sequence:

>642_bases
ATGCATCTGGGCGAATTCCTCTTCCTCCTTCAGGGCCTGAAGTGGACGGTCATCCTCTCCGCCATCGCCTTCGTGCTCGG
GGGTGTCGGCGGCCTCGCGGTGGCGCTGCTGCGCACCTCGGGCGTTCCGCTTCTCGAGCGCGTCACCGCCGGCTACATCT
CCCTCTTCCAGGGCACGCCGCTGCTGATGCAGCTGTTCGTGGTCTATTACGGTCTCGCCCTTGTCGGCATCCGGCTTAAT
CCCTGGGCGGCGGTCTCCGTCGGCTTCACGCTTCATGCCAGCGCCTATCTCGGCGAGATCTGGCGCGGGTCCATCGAGGC
GGTGCCGCGCGGCCAGACGGAAGCCTCCCATGCGCTCAGCCTGGGTTACGTCTCGCGCATGCGCGATGTGGTGCTGCCGC
AGGCCATCCGCATCTCGCTGCCGGCGACGATCGGCTTTCTGGTGCAGCTCATCAAGGGCACCTCGCTCGCTTCCATCGTC
GGCTTCACCGAGCTGGCACGGGCCGGAAATATCGTCTCCAACCAGATTTTCCAGCCGCTGCTGGTCTTCGGCATCGTCGG
TATTCTCTATTTCCTGATGTGCTGGCCGCTGTCGCTGTTCGGCGCACATCTGGAACGGCGCTTCGCCACACCCGCCCGCT
GA

Upstream 100 bases:

>100_bases
GCGACGTTCATGTATCTCGTGATCTCCTGGATGATGATGCGCTTCTTCGCGCTCATCTCCGCCCGCTACTTCAGCTATCC
GGTCAAGTGAGGAGCGTGGG

Downstream 100 bases:

>100_bases
GACGGGCCAAAACCAAGAGCATCGCTGCCAAAACAGAACATCAAGGGAGAGGAAACATGAGCATTCAGAAGCCTACCCGC
CGCCTCGTGGCCGCAACCCT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MHLGEFLFLLQGLKWTVILSAIAFVLGGVGGLAVALLRTSGVPLLERVTAGYISLFQGTPLLMQLFVVYYGLALVGIRLN
PWAAVSVGFTLHASAYLGEIWRGSIEAVPRGQTEASHALSLGYVSRMRDVVLPQAIRISLPATIGFLVQLIKGTSLASIV
GFTELARAGNIVSNQIFQPLLVFGIVGILYFLMCWPLSLFGAHLERRFATPAR

Sequences:

>Translated_213_residues
MHLGEFLFLLQGLKWTVILSAIAFVLGGVGGLAVALLRTSGVPLLERVTAGYISLFQGTPLLMQLFVVYYGLALVGIRLN
PWAAVSVGFTLHASAYLGEIWRGSIEAVPRGQTEASHALSLGYVSRMRDVVLPQAIRISLPATIGFLVQLIKGTSLASIV
GFTELARAGNIVSNQIFQPLLVFGIVGILYFLMCWPLSLFGAHLERRFATPAR
>Mature_213_residues
MHLGEFLFLLQGLKWTVILSAIAFVLGGVGGLAVALLRTSGVPLLERVTAGYISLFQGTPLLMQLFVVYYGLALVGIRLN
PWAAVSVGFTLHASAYLGEIWRGSIEAVPRGQTEASHALSLGYVSRMRDVVLPQAIRISLPATIGFLVQLIKGTSLASIV
GFTELARAGNIVSNQIFQPLLVFGIVGILYFLMCWPLSLFGAHLERRFATPAR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=206, Percent_Identity=33.0097087378641, Blast_Score=122, Evalue=1e-29,
Organism=Escherichia coli, GI1787030, Length=205, Percent_Identity=33.6585365853659, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI87082239, Length=208, Percent_Identity=29.8076923076923, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787086, Length=209, Percent_Identity=28.7081339712919, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1788645, Length=204, Percent_Identity=30.3921568627451, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786873, Length=210, Percent_Identity=26.6666666666667, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI48994930, Length=133, Percent_Identity=30.8270676691729, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1788646, Length=218, Percent_Identity=26.605504587156, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786874, Length=180, Percent_Identity=27.2222222222222, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23012; Mature: 23012

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLGEFLFLLQGLKWTVILSAIAFVLGGVGGLAVALLRTSGVPLLERVTAGYISLFQGTP
CCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH
LLMQLFVVYYGLALVGIRLNPWAAVSVGFTLHASAYLGEIWRGSIEAVPRGQTEASHALS
HHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LGYVSRMRDVVLPQAIRISLPATIGFLVQLIKGTSLASIVGFTELARAGNIVSNQIFQPL
HHHHHHHHHHHCCHHHHEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHH
LVFGIVGILYFLMCWPLSLFGAHLERRFATPAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MHLGEFLFLLQGLKWTVILSAIAFVLGGVGGLAVALLRTSGVPLLERVTAGYISLFQGTP
CCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH
LLMQLFVVYYGLALVGIRLNPWAAVSVGFTLHASAYLGEIWRGSIEAVPRGQTEASHALS
HHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LGYVSRMRDVVLPQAIRISLPATIGFLVQLIKGTSLASIVGFTELARAGNIVSNQIFQPL
HHHHHHHHHHHCCHHHHEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHH
LVFGIVGILYFLMCWPLSLFGAHLERRFATPAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]