Click here to switch to the map view.

The map label for this gene is ydeP [H]

Identifier: 158422980

GI number: 158422980

Start: 1528175

End: 1530475

Strand: Reverse

Name: ydeP [H]

Synonym: AZC_1356

Alternate gene names: 158422980

Gene position: 1530475-1528175 (Counterclockwise)

Preceding gene: 158422981

Following gene: 158422979

Centisome position: 28.5

GC content: 65.93

Gene sequence:

>2301_bases
ATGGGCGTCGCCAAGACCATCCGTCCCTATCACCAACCCGCCGGCGGCTGGGGGGCTCTCAAGGCAATGGGCACCGCGCT
GGTCGAGCAGCACGTCGCCGTGCACGGCATGGCGACGCTCGCCCGGATGAACCAGCCCGGCGGCTTCGATTGCCCCGGCT
GCGGGTGGGCCGACCCGAAGCACACCTCGCCGTTCGAATATTGCGAGAACGGCGGCAAGGCGGTTGCCTGGGAGATGACG
ACCCGGCGCTGCACGCCCGCCTTCTTCGAAAGCCATACGGTCAGCGAGCTCTCGGCCCTCAACGATTACGAGCTGGAGAT
GGAGGGGCGCCTGACGCACCCCATGCGCTATGACGCCATAAGCGATCGCTACCTGCCGGTGAGCTGGGATGAGGCCTTCG
CCCTGGTCGGCGCGCACCTCAACGCCCTGCCCGATCCGAACATGGCGGAATTCTACACGTCAGGACGCGCCTCCAACGAG
GCGGCCTTTCTCTACCAGCTTTTCGCCCGCGAATACGGCACCAACAATTTCCCAGACTGCTCGAACATGTGCCATGAGGC
CACCAGCGTCGGGCTGCCCCAATCCATCGGGGTGGGCAAGGGAACGGTGCTGCTGGAGGACTTCGCCCGCGCCGACTGCA
TCTTCATCTTCGGGCAGAATCCCGGCACCAATTCCCCGCGCATGATGACGGAACTGCGCAACGCCTCGCGCCGCGGCGCC
ACCATCATGTCCTTCAATCCCTTCCGCGAGCGGGCGCTGGAGCGCTTCCAGGCGCCGCAGAGCCCGGTAGAGATGGCCAC
CCTCTCCTCGACGCCCATCTCCTCGCGGCTCTATCAGGTGAAGGTCGGCGGCGACGTAGCGCTCATCAAGGGACTGATGA
AATGCCTCCTCGCCGCGGACGAAGAGGCCCGCGCACGCGAGTCGGCTCCCGTCCTCGACTGGGATTTCATCAAGGGCCAC
ACCGCCGGGATCGAGGCGCTCGTTGCGGACCTCAACGCGACCTCCTGGAGCGACGTCGAGCGCAAGAGCGGCATTTCGCG
CACGGAGATCGAGATCGCCGCACAGGCCTATATGAAGGCGGAGCGGGCCATCCTCGTCTATGGAATGGGCATCACCCAAC
ACCGCCACGGCACGCAGAATGTGCAGCAGATTGCCAATCTGGCGCTGTTGCGGGGGAACGTCGGCCGCGAGGGCGCGGGC
ATCTGCCCCGTGCGCGGCCACTCCAACGTGCAGGGTGATCGCACCGTCGGGATCACCGAAACGCCGAGCCGGGCGCTGCT
CGATGCCATCGAAGCGCGCTACGGCTTCTCGCCCCCGAAAGCCGATGGCCACAATGTGGTGACCGCGCTTGAGGCCATGG
TGCGGGGCGAGACCAAGGTCTTCATCGGCCTCGGCGGCAACTTCGCCGCCGCCATCCCGGACTGGCAGCTGACCCAGCAG
GCCATGCGCGGGCTCGACCTCACCGTCCACATCGCCACCAAGCTCAACCGGAGCCATCTCGTCCATGGACGCGATGCGCT
CATCCTCCCCTGCCTCGGCCGAACCGAGATCGACATGCAGGCGAGCGGCCCGCAATCAGTGACAGTGGAGGACTCCATGT
CGATGGTCCACGCCTCCACCGGCCACAATCTGCCCGCATCCGAAAACCTGAAGAGCGAGCCCGCCATTATCGCCGGCATG
GCCCGTGCCACGCTGGGCCACCGCTCGAAGGTGAACTGGGAGGCACTCACCGAAGACTATGCGCGGATCCGCGAGGAGAT
CGAGGCGGTGTTCCCCATCTTCCAGGGCTACAATGCCCGCATTCGCGAGCCGGGCGGCTTCCATCTCACCTCGCTCGCCC
GCGAGCGCATCTGGGCCACGGCAACCGGCAAGGCGAACTTCCTCGTCTGCGACGGACTCTGCGAAGATCCGCAGGTGAGC
GAGAAGGATGTTCTGTGGCTCACCACCGTGCGCAGCCACGACCAGTACAACACCACGCTGTATTCCCTCTCCGACCGCTA
TCGCGGCGTCTATGGCCAGCGCGACGTGATTTTTCTCAGCCAAGCGGAGATGGACAGGCGCGGGCTCAAGGCCGACGACC
GGGTCGATATCGTCACGGTCTCGCAGGACGGGGTCGAACGGGCCGTGCGGGCCTTCCGTGTGGTGCCCTATGCCTTCCCC
GAAGGCGGGTGCGCCGCCTATTACCCCGAGACCAATCCTCTGGTGCCGCTCTATGCGCACGATCCCCAGAGCTTCACGCC
GGCCTCAAAGGGTGTGCCGGTCCGTCTCGTGAAATCCACGGCCACGCCCGCCGTTCAGTGA

Upstream 100 bases:

>100_bases
GTTCATCCATGAACTGCTGATCGTCGGTCCAACACGTGGACGTCAGTCCATCCGACCGGTCTCTCAGCCCCTTGTGTATC
CACATCGGCAGGAGCAATCC

Downstream 100 bases:

>100_bases
GGTCGGACGCGGCGGCGCGCGGGCGATCTTTGCCGGATCGCCGCCCGATGCGCCGTCGCTCAGCACTCCGCAAGTCGGTG
CATGACGATCTGTCGGTATT

Product: formate dehydrogenase subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 766; Mature: 765

Protein sequence:

>766_residues
MGVAKTIRPYHQPAGGWGALKAMGTALVEQHVAVHGMATLARMNQPGGFDCPGCGWADPKHTSPFEYCENGGKAVAWEMT
TRRCTPAFFESHTVSELSALNDYELEMEGRLTHPMRYDAISDRYLPVSWDEAFALVGAHLNALPDPNMAEFYTSGRASNE
AAFLYQLFAREYGTNNFPDCSNMCHEATSVGLPQSIGVGKGTVLLEDFARADCIFIFGQNPGTNSPRMMTELRNASRRGA
TIMSFNPFRERALERFQAPQSPVEMATLSSTPISSRLYQVKVGGDVALIKGLMKCLLAADEEARARESAPVLDWDFIKGH
TAGIEALVADLNATSWSDVERKSGISRTEIEIAAQAYMKAERAILVYGMGITQHRHGTQNVQQIANLALLRGNVGREGAG
ICPVRGHSNVQGDRTVGITETPSRALLDAIEARYGFSPPKADGHNVVTALEAMVRGETKVFIGLGGNFAAAIPDWQLTQQ
AMRGLDLTVHIATKLNRSHLVHGRDALILPCLGRTEIDMQASGPQSVTVEDSMSMVHASTGHNLPASENLKSEPAIIAGM
ARATLGHRSKVNWEALTEDYARIREEIEAVFPIFQGYNARIREPGGFHLTSLARERIWATATGKANFLVCDGLCEDPQVS
EKDVLWLTTVRSHDQYNTTLYSLSDRYRGVYGQRDVIFLSQAEMDRRGLKADDRVDIVTVSQDGVERAVRAFRVVPYAFP
EGGCAAYYPETNPLVPLYAHDPQSFTPASKGVPVRLVKSTATPAVQ

Sequences:

>Translated_766_residues
MGVAKTIRPYHQPAGGWGALKAMGTALVEQHVAVHGMATLARMNQPGGFDCPGCGWADPKHTSPFEYCENGGKAVAWEMT
TRRCTPAFFESHTVSELSALNDYELEMEGRLTHPMRYDAISDRYLPVSWDEAFALVGAHLNALPDPNMAEFYTSGRASNE
AAFLYQLFAREYGTNNFPDCSNMCHEATSVGLPQSIGVGKGTVLLEDFARADCIFIFGQNPGTNSPRMMTELRNASRRGA
TIMSFNPFRERALERFQAPQSPVEMATLSSTPISSRLYQVKVGGDVALIKGLMKCLLAADEEARARESAPVLDWDFIKGH
TAGIEALVADLNATSWSDVERKSGISRTEIEIAAQAYMKAERAILVYGMGITQHRHGTQNVQQIANLALLRGNVGREGAG
ICPVRGHSNVQGDRTVGITETPSRALLDAIEARYGFSPPKADGHNVVTALEAMVRGETKVFIGLGGNFAAAIPDWQLTQQ
AMRGLDLTVHIATKLNRSHLVHGRDALILPCLGRTEIDMQASGPQSVTVEDSMSMVHASTGHNLPASENLKSEPAIIAGM
ARATLGHRSKVNWEALTEDYARIREEIEAVFPIFQGYNARIREPGGFHLTSLARERIWATATGKANFLVCDGLCEDPQVS
EKDVLWLTTVRSHDQYNTTLYSLSDRYRGVYGQRDVIFLSQAEMDRRGLKADDRVDIVTVSQDGVERAVRAFRVVPYAFP
EGGCAAYYPETNPLVPLYAHDPQSFTPASKGVPVRLVKSTATPAVQ
>Mature_765_residues
GVAKTIRPYHQPAGGWGALKAMGTALVEQHVAVHGMATLARMNQPGGFDCPGCGWADPKHTSPFEYCENGGKAVAWEMTT
RRCTPAFFESHTVSELSALNDYELEMEGRLTHPMRYDAISDRYLPVSWDEAFALVGAHLNALPDPNMAEFYTSGRASNEA
AFLYQLFAREYGTNNFPDCSNMCHEATSVGLPQSIGVGKGTVLLEDFARADCIFIFGQNPGTNSPRMMTELRNASRRGAT
IMSFNPFRERALERFQAPQSPVEMATLSSTPISSRLYQVKVGGDVALIKGLMKCLLAADEEARARESAPVLDWDFIKGHT
AGIEALVADLNATSWSDVERKSGISRTEIEIAAQAYMKAERAILVYGMGITQHRHGTQNVQQIANLALLRGNVGREGAGI
CPVRGHSNVQGDRTVGITETPSRALLDAIEARYGFSPPKADGHNVVTALEAMVRGETKVFIGLGGNFAAAIPDWQLTQQA
MRGLDLTVHIATKLNRSHLVHGRDALILPCLGRTEIDMQASGPQSVTVEDSMSMVHASTGHNLPASENLKSEPAIIAGMA
RATLGHRSKVNWEALTEDYARIREEIEAVFPIFQGYNARIREPGGFHLTSLARERIWATATGKANFLVCDGLCEDPQVSE
KDVLWLTTVRSHDQYNTTLYSLSDRYRGVYGQRDVIFLSQAEMDRRGLKADDRVDIVTVSQDGVERAVRAFRVVPYAFPE
GGCAAYYPETNPLVPLYAHDPQSFTPASKGVPVRLVKSTATPAVQ

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=760, Percent_Identity=53.8157894736842, Blast_Score=847, Evalue=0.0,
Organism=Escherichia coli, GI3868721, Length=323, Percent_Identity=30.3405572755418, Blast_Score=147, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 83767; Mature: 83636

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVAKTIRPYHQPAGGWGALKAMGTALVEQHVAVHGMATLARMNQPGGFDCPGCGWADPK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
HTSPFEYCENGGKAVAWEMTTRRCTPAFFESHTVSELSALNDYELEMEGRLTHPMRYDAI
CCCCHHHHHCCCCEEEEECCCCCCCHHHHHCCHHHHHHHCCCCEEEECCCCCCCEECCCC
SDRYLPVSWDEAFALVGAHLNALPDPNMAEFYTSGRASNEAAFLYQLFAREYGTNNFPDC
CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCH
SNMCHEATSVGLPQSIGVGKGTVLLEDFARADCIFIFGQNPGTNSPRMMTELRNASRRGA
HHHHHHHHHCCCCCCCCCCCCEEEEEHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCC
TIMSFNPFRERALERFQAPQSPVEMATLSSTPISSRLYQVKVGGDVALIKGLMKCLLAAD
EEEEECHHHHHHHHHHCCCCCCHHEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHCC
EEARARESAPVLDWDFIKGHTAGIEALVADLNATSWSDVERKSGISRTEIEIAAQAYMKA
CHHHHHCCCCCCEEHHHCCCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHH
ERAILVYGMGITQHRHGTQNVQQIANLALLRGNVGREGAGICPVRGHSNVQGDRTVGITE
CCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCEEECCCC
TPSRALLDAIEARYGFSPPKADGHNVVTALEAMVRGETKVFIGLGGNFAAAIPDWQLTQQ
CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCEEECCCCHHHHHH
AMRGLDLTVHIATKLNRSHLVHGRDALILPCLGRTEIDMQASGPQSVTVEDSMSMVHAST
HHCCCCEEEEEEECCCCHHEECCCCEEEEECCCCCEEEEECCCCCEEEECCCHHHEEECC
GHNLPASENLKSEPAIIAGMARATLGHRSKVNWEALTEDYARIREEIEAVFPIFQGYNAR
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE
IREPGGFHLTSLARERIWATATGKANFLVCDGLCEDPQVSEKDVLWLTTVRSHDQYNTTL
ECCCCCEEHHHHHHHHEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEE
YSLSDRYRGVYGQRDVIFLSQAEMDRRGLKADDRVDIVTVSQDGVERAVRAFRVVPYAFP
EEHHHHHCCCCCCCCEEEEECCCHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHCEEECC
EGGCAAYYPETNPLVPLYAHDPQSFTPASKGVPVRLVKSTATPAVQ
CCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure 
GVAKTIRPYHQPAGGWGALKAMGTALVEQHVAVHGMATLARMNQPGGFDCPGCGWADPK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
HTSPFEYCENGGKAVAWEMTTRRCTPAFFESHTVSELSALNDYELEMEGRLTHPMRYDAI
CCCCHHHHHCCCCEEEEECCCCCCCHHHHHCCHHHHHHHCCCCEEEECCCCCCCEECCCC
SDRYLPVSWDEAFALVGAHLNALPDPNMAEFYTSGRASNEAAFLYQLFAREYGTNNFPDC
CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCH
SNMCHEATSVGLPQSIGVGKGTVLLEDFARADCIFIFGQNPGTNSPRMMTELRNASRRGA
HHHHHHHHHCCCCCCCCCCCCEEEEEHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCC
TIMSFNPFRERALERFQAPQSPVEMATLSSTPISSRLYQVKVGGDVALIKGLMKCLLAAD
EEEEECHHHHHHHHHHCCCCCCHHEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHCC
EEARARESAPVLDWDFIKGHTAGIEALVADLNATSWSDVERKSGISRTEIEIAAQAYMKA
CHHHHHCCCCCCEEHHHCCCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHH
ERAILVYGMGITQHRHGTQNVQQIANLALLRGNVGREGAGICPVRGHSNVQGDRTVGITE
CCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCEEECCCC
TPSRALLDAIEARYGFSPPKADGHNVVTALEAMVRGETKVFIGLGGNFAAAIPDWQLTQQ
CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCEEECCCCHHHHHH
AMRGLDLTVHIATKLNRSHLVHGRDALILPCLGRTEIDMQASGPQSVTVEDSMSMVHAST
HHCCCCEEEEEEECCCCHHEECCCCEEEEECCCCCEEEEECCCCCEEEECCCHHHEEECC
GHNLPASENLKSEPAIIAGMARATLGHRSKVNWEALTEDYARIREEIEAVFPIFQGYNAR
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE
IREPGGFHLTSLARERIWATATGKANFLVCDGLCEDPQVSEKDVLWLTTVRSHDQYNTTL
ECCCCCEEHHHHHHHHEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEE
YSLSDRYRGVYGQRDVIFLSQAEMDRRGLKADDRVDIVTVSQDGVERAVRAFRVVPYAFP
EEHHHHHCCCCCCCCEEEEECCCHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHCEEECC
EGGCAAYYPETNPLVPLYAHDPQSFTPASKGVPVRLVKSTATPAVQ
CCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]