Click here to switch to the map view.

The map label for this gene is yncD [H]

Identifier: 158422880

GI number: 158422880

Start: 1405864

End: 1407969

Strand: Reverse

Name: yncD [H]

Synonym: AZC_1256

Alternate gene names: 158422880

Gene position: 1407969-1405864 (Counterclockwise)

Preceding gene: 158422881

Following gene: 158422878

Centisome position: 26.22

GC content: 64.77

Gene sequence:

>2106_bases
ATGCCTTATTCCCCACCCCGTCCCCTGCTTCGGGGCGCCCTTCCGCGCGCCCTCCTTGCCGCCACCGCGCTGGCGCTTCC
CGGTTCCGCTCTCGCCCAGCAGGTCCCCGCTGCCGCGAGCGCGGTGGAACTGCCCACCATCTCCGTGCAGGCGGCACCGG
GCGGCAGCCTTACCGTCCCGTCCGAATCGCAGGCGCGGGCGAACATCGAGCTCACGCCCGGCGGCGCCGAGGTGGTGGGC
GCCATGACATGGGATGACACGCAGGCCAAGACCATCAAGGACATGCTGGACTTCGTGCCGGGCGTGTTCGCGCAGCCGAA
ATGGGGCGAGGACACCCGCCTGTCCATTCGCGGCTCCGGCATCTCGCGCAGCGCGCACCTGCGGGGCATCCAGCTGTTTC
AGGATGGTGTTCCCCTGTCCTCCGTGGATGGCGGCGGCGACTTTCAGGAGATCGACCCCACCGCCTTCCAATATGTGGAG
GTGTTCAAGGGCGCCAACGGCTACCAGTTCGGCGCCAATGCGCTGGGCGGCGCCATCAATTTCGTGACGCCCACGGGCCG
CACGGCGAGCCCGTTCGAGGCCCGCTTCGACATCGGCTCCTTCGGCTTCTATCGCCTTCAGGCGAGCAGCGGCGGTGCGC
AGGGCGCCTTCGATGGCTTCGTCACCGGCTCGTGGCTGACTCAGGAAGGCTTCCGCGACCACTCCGCAGGCGAGAACACG
CGCGGCAGCGCCAATTTTGGCATCCAGCTCAACGAGAGCCTGGAGACGCGCTTCTATCTCAATGCCACCAATGTGAACCA
GCAGATCCCCGGCGCCGTCTCCAAGACCGTGGCGCTGAATTCTCCGCAGACCGCCAATCCCACCAACGTGCTGCTGAATT
ACCAGCGCAACATCGAGTCCGTGCGCCTCGCCAACAAGACAACGGCCCTGCTCTCCGACACCACGAAGCTGGAGGCCGGC
GTCTTCTACACCAACAAGGATCTCAACCACCCCATCTTTCAGGTGCTGAACTACAATTACGAGGAATATGGCGCCTTCAC
CCGCCTCGTGGACGAGCGCAGCATCGGCGGCTTCAACAACCGCCTCGTGCTCGGGATCAATTACGGAACCGGCACCACCG
ACGCCAAGCGCTACAACAATGTGGCGGGCATCGCCGGCGCCCTCGCCTACTGGAGCAACGACAGCGCCACCACGACGACC
TATTATTTCGAGGACCATTTCTATCTGGCCCCGAACTTCGCCTTCGTCGGCGCCGGCCAGTTCCTCACCGCCAGCCTCGA
CCGCACGGCCTTCTACAAGGCGGTGTCGGGCGGCAACGACTACAACCTGTTCCTGCCCAAGGGCGGCTTCGTCTACGAGA
TGGCGCCGGGCGCGCAGGTCTTCGGCAACGTCTCGCGCTCCGGCGAGATACCGACCTTCTCCGAGCTCACCGACTTCGGC
AGCGTGGTCATCGGCAATCTGAAGGCGCAGACGGCGACGACGGTCGAGATCGGCACCCGCGGCCGCCAGCCGACCTACAG
CTGGGACGTCTCGCTCTATCGCTCGTGGGTGCAGAACGAGCTGCAGTGCCAGGACCCCGGCAACACGCAAGGCCTCACCT
GCACGGTGGTCAATCTCGGCAGCACCATCCATCAGGGGCTGGAGCTGGGCTTCGGCGTGCAGGTGCTGAAGGATCTCTTC
ACGCCCGGCCCGATCACCGACAGCATCTGGCTGAATGTCGCCTACACCTACAGCGACTTCTATTTCGACAATGATCCGGT
GTGGGGCAACAACCGCCTGCCGGGCATCCCGCCCCACTATCTGCGGGCGGAACTGCTCTACAAGCATCCGAGCGGCTTCT
ACGCAGGGCCGAACGTGGAGTGGGTGCCGGTAGCCTATTATGTGGACGACGCCAATACGCTCGACACCTCGCCCTACGCC
CTGCTCAACTTCCGCACGGGTTACGACAACGGCAAAGGGCCGGCGGTCTATCTCGACGCCCGCAACCTTCTGAATGTGAA
CTATATCGCGAGCGTGAGCGTAACCGGTCGGGCCAGTCCAAACCAGGCGCTGTTCGAGCCCGGCAACGGCCGCTCTGTGG
TGGTGGGCACGCGCTTCAAGTTCTGA

Upstream 100 bases:

>100_bases
GAACCGCAGGCGCTGAAGGGCACCGCTCCCGCCATTTCCGCCCATAGCTCGTTTCTCAGGCCCGGCCGCCGATGGGCGCC
GGAGGCCGCGGTGCATTGCC

Downstream 100 bases:

>100_bases
GCGCAGGGTCCGGGCCGCCGCCTTCGGGCGGCGACCCGGTCGGGGTCAGGTCCTGTCCGGCGCGCGGGTGGCAAGGGCGC
TGAACGGCTTGCCAGCCTTC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 701; Mature: 700

Protein sequence:

>701_residues
MPYSPPRPLLRGALPRALLAATALALPGSALAQQVPAAASAVELPTISVQAAPGGSLTVPSESQARANIELTPGGAEVVG
AMTWDDTQAKTIKDMLDFVPGVFAQPKWGEDTRLSIRGSGISRSAHLRGIQLFQDGVPLSSVDGGGDFQEIDPTAFQYVE
VFKGANGYQFGANALGGAINFVTPTGRTASPFEARFDIGSFGFYRLQASSGGAQGAFDGFVTGSWLTQEGFRDHSAGENT
RGSANFGIQLNESLETRFYLNATNVNQQIPGAVSKTVALNSPQTANPTNVLLNYQRNIESVRLANKTTALLSDTTKLEAG
VFYTNKDLNHPIFQVLNYNYEEYGAFTRLVDERSIGGFNNRLVLGINYGTGTTDAKRYNNVAGIAGALAYWSNDSATTTT
YYFEDHFYLAPNFAFVGAGQFLTASLDRTAFYKAVSGGNDYNLFLPKGGFVYEMAPGAQVFGNVSRSGEIPTFSELTDFG
SVVIGNLKAQTATTVEIGTRGRQPTYSWDVSLYRSWVQNELQCQDPGNTQGLTCTVVNLGSTIHQGLELGFGVQVLKDLF
TPGPITDSIWLNVAYTYSDFYFDNDPVWGNNRLPGIPPHYLRAELLYKHPSGFYAGPNVEWVPVAYYVDDANTLDTSPYA
LLNFRTGYDNGKGPAVYLDARNLLNVNYIASVSVTGRASPNQALFEPGNGRSVVVGTRFKF

Sequences:

>Translated_701_residues
MPYSPPRPLLRGALPRALLAATALALPGSALAQQVPAAASAVELPTISVQAAPGGSLTVPSESQARANIELTPGGAEVVG
AMTWDDTQAKTIKDMLDFVPGVFAQPKWGEDTRLSIRGSGISRSAHLRGIQLFQDGVPLSSVDGGGDFQEIDPTAFQYVE
VFKGANGYQFGANALGGAINFVTPTGRTASPFEARFDIGSFGFYRLQASSGGAQGAFDGFVTGSWLTQEGFRDHSAGENT
RGSANFGIQLNESLETRFYLNATNVNQQIPGAVSKTVALNSPQTANPTNVLLNYQRNIESVRLANKTTALLSDTTKLEAG
VFYTNKDLNHPIFQVLNYNYEEYGAFTRLVDERSIGGFNNRLVLGINYGTGTTDAKRYNNVAGIAGALAYWSNDSATTTT
YYFEDHFYLAPNFAFVGAGQFLTASLDRTAFYKAVSGGNDYNLFLPKGGFVYEMAPGAQVFGNVSRSGEIPTFSELTDFG
SVVIGNLKAQTATTVEIGTRGRQPTYSWDVSLYRSWVQNELQCQDPGNTQGLTCTVVNLGSTIHQGLELGFGVQVLKDLF
TPGPITDSIWLNVAYTYSDFYFDNDPVWGNNRLPGIPPHYLRAELLYKHPSGFYAGPNVEWVPVAYYVDDANTLDTSPYA
LLNFRTGYDNGKGPAVYLDARNLLNVNYIASVSVTGRASPNQALFEPGNGRSVVVGTRFKF
>Mature_700_residues
PYSPPRPLLRGALPRALLAATALALPGSALAQQVPAAASAVELPTISVQAAPGGSLTVPSESQARANIELTPGGAEVVGA
MTWDDTQAKTIKDMLDFVPGVFAQPKWGEDTRLSIRGSGISRSAHLRGIQLFQDGVPLSSVDGGGDFQEIDPTAFQYVEV
FKGANGYQFGANALGGAINFVTPTGRTASPFEARFDIGSFGFYRLQASSGGAQGAFDGFVTGSWLTQEGFRDHSAGENTR
GSANFGIQLNESLETRFYLNATNVNQQIPGAVSKTVALNSPQTANPTNVLLNYQRNIESVRLANKTTALLSDTTKLEAGV
FYTNKDLNHPIFQVLNYNYEEYGAFTRLVDERSIGGFNNRLVLGINYGTGTTDAKRYNNVAGIAGALAYWSNDSATTTTY
YFEDHFYLAPNFAFVGAGQFLTASLDRTAFYKAVSGGNDYNLFLPKGGFVYEMAPGAQVFGNVSRSGEIPTFSELTDFGS
VVIGNLKAQTATTVEIGTRGRQPTYSWDVSLYRSWVQNELQCQDPGNTQGLTCTVVNLGSTIHQGLELGFGVQVLKDLFT
PGPITDSIWLNVAYTYSDFYFDNDPVWGNNRLPGIPPHYLRAELLYKHPSGFYAGPNVEWVPVAYYVDDANTLDTSPYAL
LNFRTGYDNGKGPAVYLDARNLLNVNYIASVSVTGRASPNQALFEPGNGRSVVVGTRFKF

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=693, Percent_Identity=25.8297258297258, Blast_Score=166, Evalue=5e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 75665; Mature: 75534

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYSPPRPLLRGALPRALLAATALALPGSALAQQVPAAASAVELPTISVQAAPGGSLTVP
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEECCEEEEEECCCCCEECC
SESQARANIELTPGGAEVVGAMTWDDTQAKTIKDMLDFVPGVFAQPKWGEDTRLSIRGSG
CCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
ISRSAHLRGIQLFQDGVPLSSVDGGGDFQEIDPTAFQYVEVFKGANGYQFGANALGGAIN
CCCCHHHCEEEEHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHCCCEEE
FVTPTGRTASPFEARFDIGSFGFYRLQASSGGAQGAFDGFVTGSWLTQEGFRDHSAGENT
EECCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
RGSANFGIQLNESLETRFYLNATNVNQQIPGAVSKTVALNSPQTANPTNVLLNYQRNIES
CCCCEEEEEECCCCCEEEEEEECCCCCCCCCCHHEEEEECCCCCCCCCEEEEEECCCCCE
VRLANKTTALLSDTTKLEAGVFYTNKDLNHPIFQVLNYNYEEYGAFTRLVDERSIGGFNN
EEECCCCEEEHCCCCEEEEEEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
RLVLGINYGTGTTDAKRYNNVAGIAGALAYWSNDSATTTTYYFEDHFYLAPNFAFVGAGQ
EEEEEEECCCCCCCHHHHCCHHHHHHEEEEECCCCCEEEEEEEECEEEECCCEEEEECCC
FLTASLDRTAFYKAVSGGNDYNLFLPKGGFVYEMAPGAQVFGNVSRSGEIPTFSELTDFG
EEEEECCHHHHEEECCCCCCEEEEECCCCEEEEECCCHHHHCCCCCCCCCCCHHHHHHCC
SVVIGNLKAQTATTVEIGTRGRQPTYSWDVSLYRSWVQNELQCQDPGNTQGLTCTVVNLG
CEEEECCCCCEEEEEEECCCCCCCCEEECHHHHHHHHCCCEEECCCCCCCCEEEEEEECC
STIHQGLELGFGVQVLKDLFTPGPITDSIWLNVAYTYSDFYFDNDPVWGNNRLPGIPPHY
HHHHHHHHCCCCHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCHHH
LRAELLYKHPSGFYAGPNVEWVPVAYYVDDANTLDTSPYALLNFRTGYDNGKGPAVYLDA
HHHHHEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEEEC
RNLLNVNYIASVSVTGRASPNQALFEPGNGRSVVVGTRFKF
CCEEEEEEEEEEEEECCCCCCCCEECCCCCCEEEEEEEECC
>Mature Secondary Structure 
PYSPPRPLLRGALPRALLAATALALPGSALAQQVPAAASAVELPTISVQAAPGGSLTVP
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEECCEEEEEECCCCCEECC
SESQARANIELTPGGAEVVGAMTWDDTQAKTIKDMLDFVPGVFAQPKWGEDTRLSIRGSG
CCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
ISRSAHLRGIQLFQDGVPLSSVDGGGDFQEIDPTAFQYVEVFKGANGYQFGANALGGAIN
CCCCHHHCEEEEHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHCCCEEE
FVTPTGRTASPFEARFDIGSFGFYRLQASSGGAQGAFDGFVTGSWLTQEGFRDHSAGENT
EECCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
RGSANFGIQLNESLETRFYLNATNVNQQIPGAVSKTVALNSPQTANPTNVLLNYQRNIES
CCCCEEEEEECCCCCEEEEEEECCCCCCCCCCHHEEEEECCCCCCCCCEEEEEECCCCCE
VRLANKTTALLSDTTKLEAGVFYTNKDLNHPIFQVLNYNYEEYGAFTRLVDERSIGGFNN
EEECCCCEEEHCCCCEEEEEEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
RLVLGINYGTGTTDAKRYNNVAGIAGALAYWSNDSATTTTYYFEDHFYLAPNFAFVGAGQ
EEEEEEECCCCCCCHHHHCCHHHHHHEEEEECCCCCEEEEEEEECEEEECCCEEEEECCC
FLTASLDRTAFYKAVSGGNDYNLFLPKGGFVYEMAPGAQVFGNVSRSGEIPTFSELTDFG
EEEEECCHHHHEEECCCCCCEEEEECCCCEEEEECCCHHHHCCCCCCCCCCCHHHHHHCC
SVVIGNLKAQTATTVEIGTRGRQPTYSWDVSLYRSWVQNELQCQDPGNTQGLTCTVVNLG
CEEEECCCCCEEEEEEECCCCCCCCEEECHHHHHHHHCCCEEECCCCCCCCEEEEEEECC
STIHQGLELGFGVQVLKDLFTPGPITDSIWLNVAYTYSDFYFDNDPVWGNNRLPGIPPHY
HHHHHHHHCCCCHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCHHH
LRAELLYKHPSGFYAGPNVEWVPVAYYVDDANTLDTSPYALLNFRTGYDNGKGPAVYLDA
HHHHHEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEEEC
RNLLNVNYIASVSVTGRASPNQALFEPGNGRSVVVGTRFKF
CCEEEEEEEEEEEEECCCCCCCCEECCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]