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The map label for this gene is rpoZ

Identifier: 158422877

GI number: 158422877

Start: 1402253

End: 1402639

Strand: Direct

Name: rpoZ

Synonym: AZC_1253

Alternate gene names: 158422877

Gene position: 1402253-1402639 (Clockwise)

Preceding gene: 158422873

Following gene: 158422879

Centisome position: 26.11

GC content: 63.57

Gene sequence:

>387_bases
ATGGCCCGTGTCACCGTTGAGGATTGCATCGATAAGGTGGACAACCGTTTCGAGCTTGTCCTCCTCGCCGGCCATCGCGC
CCGCATGATCTCGTCCGGCTCGCCGATCACGGTGGACCGCGATAACGACAAAAATCCGGTCGTTGCGCTGCGCGAGATCG
CTGACGAGACGGTCAGCCCCGAGGATCTCAAGGAAGACCTCATCCACTCGCTCCAGAAGTACACGGAAGTGGACGAGCCG
GAGCCCGAGTCCGTGCCGCTCATCGCCAGCAGCGAAGGCGGCGTCGACGACGCCGATATCGTTCTGGACCGCATGACCGA
GGAAGAACTCCTCGCCGGTCTCCAGGGCCTTGTGCCGCCGGAGCAGACGGACGACGACGAGGGGTGA

Upstream 100 bases:

>100_bases
AAACGCATCGGTTGCTTGCCTGCTAATCCCAAATCGGATATAGCGCCAAACTTTCCCACGCTTCGCCCAGCCGTAGCGCG
CACCAAGGAGTGCCGACACC

Downstream 100 bases:

>100_bases
CCACCCCGCTGGGGCCGCGTGCGGTCCCGCACTTCAAATTCGACGCCAGCAGGGTCTCTCGGGATTCTGCTGGCGTTTTG
CATTGTGTGCATAGCTTTTG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MARVTVEDCIDKVDNRFELVLLAGHRARMISSGSPITVDRDNDKNPVVALREIADETVSPEDLKEDLIHSLQKYTEVDEP
EPESVPLIASSEGGVDDADIVLDRMTEEELLAGLQGLVPPEQTDDDEG

Sequences:

>Translated_128_residues
MARVTVEDCIDKVDNRFELVLLAGHRARMISSGSPITVDRDNDKNPVVALREIADETVSPEDLKEDLIHSLQKYTEVDEP
EPESVPLIASSEGGVDDADIVLDRMTEEELLAGLQGLVPPEQTDDDEG
>Mature_127_residues
ARVTVEDCIDKVDNRFELVLLAGHRARMISSGSPITVDRDNDKNPVVALREIADETVSPEDLKEDLIHSLQKYTEVDEPE
PESVPLIASSEGGVDDADIVLDRMTEEELLAGLQGLVPPEQTDDDEG

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_AZOC5 (A8I0F9)

Other databases:

- EMBL:   AP009384
- RefSeq:   YP_001524169.1
- GeneID:   5691115
- GenomeReviews:   AP009384_GR
- KEGG:   azc:AZC_1253
- HOGENOM:   HBG742204
- OMA:   KVDNRFE
- ProtClustDB:   PRK00392
- BioCyc:   ACAU438753:AZC_1253-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14055; Mature: 13923

Theoretical pI: Translated: 3.83; Mature: 3.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCIDKVDNRFELVLLAGHRARMISSGSPITVDRDNDKNPVVALREIADETVSP
CCCCCHHHHHHHHCCCEEEEEECCCCEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCH
EDLKEDLIHSLQKYTEVDEPEPESVPLIASSEGGVDDADIVLDRMTEEELLAGLQGLVPP
HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCHHHHHHHHHCCCCC
EQTDDDEG
CCCCCCCC
>Mature Secondary Structure 
ARVTVEDCIDKVDNRFELVLLAGHRARMISSGSPITVDRDNDKNPVVALREIADETVSP
CCCCHHHHHHHHCCCEEEEEECCCCEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCH
EDLKEDLIHSLQKYTEVDEPEPESVPLIASSEGGVDDADIVLDRMTEEELLAGLQGLVPP
HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCHHHHHHHHHCCCCC
EQTDDDEG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA