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The map label for this gene is yddE [C]

Identifier: 158422864

GI number: 158422864

Start: 1390035

End: 1390817

Strand: Reverse

Name: yddE [C]

Synonym: AZC_1240

Alternate gene names: 158422864

Gene position: 1390817-1390035 (Counterclockwise)

Preceding gene: 158422865

Following gene: 158422854

Centisome position: 25.9

GC content: 69.48

Gene sequence:

>783_bases
ATGAAAGCCCCGCTGTTCCAGGTCGACGCCTTCACCACGCGCCGCTTCGCCGGCAATCCCGCCGCCGTGATGCTGCTGGA
GGCCTATCCGGAAGACGAAACGCTGCGCGCCATCGCAGCCGAGAACAACCTCTCAGAGACCGCCTTTCTGGTGAGAGAGG
GCGGCGACTATCACCTGCGCTGGTTCACGCCCAAGGTGGAAGTGCCGCTCTGCGGCCATGCCACGCTTGCCAGCGCGGCG
GTGGTGATGGAGCGGCTGGAGCCGGGGCGTGCTTCGGTGACGTTCCACACCGCCAGCGGCGCCCTGCCCGTTTCCCGAAG
CGGCACGGGCTATGTGCTGGACTTCCCGGCGCGCGGCAGCGAGCCCATCGCCATGCCGGGCGTCGCGGCCGCGCTGGGCG
CGGCGCCGGAAGAAGTGCGCATCAATCCCTTCACCTACATGGCCGTGCTTGCGGACGCCGCGACCGTGCGCGGGCTTTCT
CCCGGTATGGCCGCCATCGCCGCGCTCGACCGGCCCGGCCTTATCGTGACCGCGCCGGGCGATAACGCTTATGATGTGGT
CAGCCGCTACTTCGCCCCCGCCAAGGGGATTCCCGAGGACCCGGTCACGGGGGCGGCCCATACGACTCTCGTGCCCTACT
GGGCGGAACGCCTCGGCCGCAGCACGCTCGCCTGCCATCAGGCCTCGGCGCGCGGCGGCGACCTCACCTGCCGCCTTTCG
GATGACCGCGTGCTCATCGAGGGCGCGTGCGTCTTCTTCCTCGAAGGCACGGCGGAATACTGA

Upstream 100 bases:

>100_bases
TCACACACGCCGCCGCCTATTACGCTCGGCTGGCGGAGCGCCCCGCCGGACGGGCCTACATGGCCGCCACCTACGACTGA
TCCTGATCCGAGCCCCTCCC

Downstream 100 bases:

>100_bases
ACTGAGACGAAACGTCAGGCCCGGACGTGAGCCGGGCCTGCCGATCCCTCACCAGCCCCGGAAGCGGGACCAGCGGGCGA
TATGGGCGCTGCCGTCCGCC

Product: phenazine biosynthesis PhzC/PhzF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKAPLFQVDAFTTRRFAGNPAAVMLLEAYPEDETLRAIAAENNLSETAFLVREGGDYHLRWFTPKVEVPLCGHATLASAA
VVMERLEPGRASVTFHTASGALPVSRSGTGYVLDFPARGSEPIAMPGVAAALGAAPEEVRINPFTYMAVLADAATVRGLS
PGMAAIAALDRPGLIVTAPGDNAYDVVSRYFAPAKGIPEDPVTGAAHTTLVPYWAERLGRSTLACHQASARGGDLTCRLS
DDRVLIEGACVFFLEGTAEY

Sequences:

>Translated_260_residues
MKAPLFQVDAFTTRRFAGNPAAVMLLEAYPEDETLRAIAAENNLSETAFLVREGGDYHLRWFTPKVEVPLCGHATLASAA
VVMERLEPGRASVTFHTASGALPVSRSGTGYVLDFPARGSEPIAMPGVAAALGAAPEEVRINPFTYMAVLADAATVRGLS
PGMAAIAALDRPGLIVTAPGDNAYDVVSRYFAPAKGIPEDPVTGAAHTTLVPYWAERLGRSTLACHQASARGGDLTCRLS
DDRVLIEGACVFFLEGTAEY
>Mature_260_residues
MKAPLFQVDAFTTRRFAGNPAAVMLLEAYPEDETLRAIAAENNLSETAFLVREGGDYHLRWFTPKVEVPLCGHATLASAA
VVMERLEPGRASVTFHTASGALPVSRSGTGYVLDFPARGSEPIAMPGVAAALGAAPEEVRINPFTYMAVLADAATVRGLS
PGMAAIAALDRPGLIVTAPGDNAYDVVSRYFAPAKGIPEDPVTGAAHTTLVPYWAERLGRSTLACHQASARGGDLTCRLS
DDRVLIEGACVFFLEGTAEY

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=285, Percent_Identity=39.2982456140351, Blast_Score=178, Evalue=4e-45,
Organism=Homo sapiens, GI74316009, Length=250, Percent_Identity=38.4, Blast_Score=158, Evalue=4e-39,
Organism=Escherichia coli, GI1787737, Length=295, Percent_Identity=29.8305084745763, Blast_Score=88, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17542160, Length=311, Percent_Identity=35.048231511254, Blast_Score=157, Evalue=7e-39,
Organism=Caenorhabditis elegans, GI17542154, Length=311, Percent_Identity=35.048231511254, Blast_Score=157, Evalue=7e-39,
Organism=Caenorhabditis elegans, GI17542158, Length=307, Percent_Identity=32.5732899022801, Blast_Score=130, Evalue=5e-31,
Organism=Caenorhabditis elegans, GI17542152, Length=307, Percent_Identity=32.5732899022801, Blast_Score=130, Evalue=5e-31,
Organism=Saccharomyces cerevisiae, GI6321818, Length=240, Percent_Identity=32.9166666666667, Blast_Score=95, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 27481; Mature: 27481

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAPLFQVDAFTTRRFAGNPAAVMLLEAYPEDETLRAIAAENNLSETAFLVREGGDYHLR
CCCCEEEEECCEEHHCCCCCEEEEEEEECCCCHHEEEEECCCCCCCEEEEEECCCCEEEE
WFTPKVEVPLCGHATLASAAVVMERLEPGRASVTFHTASGALPVSRSGTGYVLDFPARGS
EECCEECCEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEECCCCCEEEEECCCCCC
EPIAMPGVAAALGAAPEEVRINPFTYMAVLADAATVRGLSPGMAAIAALDRPGLIVTAPG
CCCCCCCHHHHHCCCCCCEEECCEEEEHHHHHHHHHCCCCCCHHHHHCCCCCCEEEECCC
DNAYDVVSRYFAPAKGIPEDPVTGAAHTTLVPYWAERLGRSTLACHQASARGGDLTCRLS
CCHHHHHHHHHCCCCCCCCCCCCCCCHHEEHHHHHHHHCCHHEEHHHCCCCCCEEEEEEC
DDRVLIEGACVFFLEGTAEY
CCEEEEEEEEEEEEECCCCC
>Mature Secondary Structure
MKAPLFQVDAFTTRRFAGNPAAVMLLEAYPEDETLRAIAAENNLSETAFLVREGGDYHLR
CCCCEEEEECCEEHHCCCCCEEEEEEEECCCCHHEEEEECCCCCCCEEEEEECCCCEEEE
WFTPKVEVPLCGHATLASAAVVMERLEPGRASVTFHTASGALPVSRSGTGYVLDFPARGS
EECCEECCEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEECCCCCEEEEECCCCCC
EPIAMPGVAAALGAAPEEVRINPFTYMAVLADAATVRGLSPGMAAIAALDRPGLIVTAPG
CCCCCCCHHHHHCCCCCCEEECCEEEEHHHHHHHHHCCCCCCHHHHHCCCCCCEEEECCC
DNAYDVVSRYFAPAKGIPEDPVTGAAHTTLVPYWAERLGRSTLACHQASARGGDLTCRLS
CCHHHHHHHHHCCCCCCCCCCCCCCCHHEEHHHHHHHHCCHHEEHHHCCCCCCEEEEEEC
DDRVLIEGACVFFLEGTAEY
CCEEEEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]