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The map label for this gene is potC [H]

Identifier: 158422858

GI number: 158422858

Start: 1384001

End: 1384807

Strand: Direct

Name: potC [H]

Synonym: AZC_1234

Alternate gene names: 158422858

Gene position: 1384001-1384807 (Clockwise)

Preceding gene: 158422857

Following gene: 158422859

Centisome position: 25.77

GC content: 67.41

Gene sequence:

>807_bases
ATGAGCCGCAACGGTCCCCTCGCGCTCGTCTTCCATGCGCTGGTCATGGTGTTCATGCTGGCGCCCATCCTCATCGTGTG
CGTGGTCGCCTTCACGCCCGAGGGCTATCTCTCCCTGCCCACCAACGGCCCGTCGCTGCGCTGGTTCAAGGCCATCGCGG
GATATCCCGAGTTCATCTCGGCTTTCGGGGATTCGCTCTGGCTCGCGGCGCTTTCCTCGCTCATCGCGGTGGGCGTCTCG
GTGCCCGCCGCGCTGGTGGTGGCGCGCCATCGCTTCCCCGGCCGGGATGCCCTGTGCGCGCTGATCCTGTCGCCGCTGAT
GATCCCGCACGTGGTGCTGGGCGTCGCCTTCCTGCGCTTCTTCACCCAGATCGGGGTCAGCGGCACCAAGGTCAGCCTAG
TGCTGGCGCACGTGGTGATCGTGCTGCCCTTCGCCTTCCGCCTCACCCTCTCCACGACCACGGGCCTCGACCGCTCGCTG
GAGCAGGCGGCGATCTCGCTCGGTGCCTCGGGGGCGACCCTGTTCCGCCGGGTGACGCTGCCGCTGATCCTGCCGGGCGT
GGTCTCCGGCCTCGTGCTCGCCTTCATCAACAGTTTCGACGAGGTGACGATGACGGTGTTCATCGCGGCCCCCGGCGCCA
CCACGCTGCCGGTGCGCCTGTTTCTTTACATCCAGGACAATATCGATCCGCTGGTGACATCGATCTCGGCGGCGCTCATC
GCGCTCACCGTGGTGGTGATGGCGCTCATCGAGAAGCTGTTCGGTCTTGAGCGGCTGCTCGCCGGCGAGGGGGGCGGACG
GTCATGA

Upstream 100 bases:

>100_bases
CGCTCGGCGCCGCCGTGGCGGTGCTGCTGCTCGCCGCCATCGCCGCCATCGTCATCGGCTGCAACACGTTGGTGGAGCGG
CGTTATGCGAGGATGACCCA

Downstream 100 bases:

>100_bases
GCGCGGCAGCGAACGAATTCGACGTCGCCGTCATCGGCGGCGGGCTGGTGGGCGCGTCCATCTCCTATGGCCTCGCCCGC
GGCGGCGCCCGCGTGGCGGT

Product: ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MSRNGPLALVFHALVMVFMLAPILIVCVVAFTPEGYLSLPTNGPSLRWFKAIAGYPEFISAFGDSLWLAALSSLIAVGVS
VPAALVVARHRFPGRDALCALILSPLMIPHVVLGVAFLRFFTQIGVSGTKVSLVLAHVVIVLPFAFRLTLSTTTGLDRSL
EQAAISLGASGATLFRRVTLPLILPGVVSGLVLAFINSFDEVTMTVFIAAPGATTLPVRLFLYIQDNIDPLVTSISAALI
ALTVVVMALIEKLFGLERLLAGEGGGRS

Sequences:

>Translated_268_residues
MSRNGPLALVFHALVMVFMLAPILIVCVVAFTPEGYLSLPTNGPSLRWFKAIAGYPEFISAFGDSLWLAALSSLIAVGVS
VPAALVVARHRFPGRDALCALILSPLMIPHVVLGVAFLRFFTQIGVSGTKVSLVLAHVVIVLPFAFRLTLSTTTGLDRSL
EQAAISLGASGATLFRRVTLPLILPGVVSGLVLAFINSFDEVTMTVFIAAPGATTLPVRLFLYIQDNIDPLVTSISAALI
ALTVVVMALIEKLFGLERLLAGEGGGRS
>Mature_267_residues
SRNGPLALVFHALVMVFMLAPILIVCVVAFTPEGYLSLPTNGPSLRWFKAIAGYPEFISAFGDSLWLAALSSLIAVGVSV
PAALVVARHRFPGRDALCALILSPLMIPHVVLGVAFLRFFTQIGVSGTKVSLVLAHVVIVLPFAFRLTLSTTTGLDRSLE
QAAISLGASGATLFRRVTLPLILPGVVSGLVLAFINSFDEVTMTVFIAAPGATTLPVRLFLYIQDNIDPLVTSISAALIA
LTVVVMALIEKLFGLERLLAGEGGGRS

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=223, Percent_Identity=26.9058295964126, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787081, Length=238, Percent_Identity=31.5126050420168, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787714, Length=228, Percent_Identity=34.2105263157895, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082099, Length=208, Percent_Identity=28.8461538461538, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788764, Length=213, Percent_Identity=26.7605633802817, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28325; Mature: 28194

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRNGPLALVFHALVMVFMLAPILIVCVVAFTPEGYLSLPTNGPSLRWFKAIAGYPEFIS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHCCCHHHHH
AFGDSLWLAALSSLIAVGVSVPAALVVARHRFPGRDALCALILSPLMIPHVVLGVAFLRF
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FTQIGVSGTKVSLVLAHVVIVLPFAFRLTLSTTTGLDRSLEQAAISLGASGATLFRRVTL
HHHHCCCCHHHHHHHHHHHHHHHHHHHHEEHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
PLILPGVVSGLVLAFINSFDEVTMTVFIAAPGATTLPVRLFLYIQDNIDPLVTSISAALI
HHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHH
ALTVVVMALIEKLFGLERLLAGEGGGRS
HHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SRNGPLALVFHALVMVFMLAPILIVCVVAFTPEGYLSLPTNGPSLRWFKAIAGYPEFIS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHCCCHHHHH
AFGDSLWLAALSSLIAVGVSVPAALVVARHRFPGRDALCALILSPLMIPHVVLGVAFLRF
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FTQIGVSGTKVSLVLAHVVIVLPFAFRLTLSTTTGLDRSLEQAAISLGASGATLFRRVTL
HHHHCCCCHHHHHHHHHHHHHHHHHHHHEEHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
PLILPGVVSGLVLAFINSFDEVTMTVFIAAPGATTLPVRLFLYIQDNIDPLVTSISAALI
HHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHH
ALTVVVMALIEKLFGLERLLAGEGGGRS
HHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]