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The map label for this gene is rplU [H]

Identifier: 158422840

GI number: 158422840

Start: 1362383

End: 1362949

Strand: Direct

Name: rplU [H]

Synonym: AZC_1216

Alternate gene names: 158422840

Gene position: 1362383-1362949 (Clockwise)

Preceding gene: 158422839

Following gene: 158422843

Centisome position: 25.37

GC content: 73.72

Gene sequence:

>567_bases
ATGATCTCGTTCGAAGTCGACGTCGCCCTGCTGCTGTTCGCCGCCTTCCTCATCGGCGGGGCGGCCGCCTATGGGCTGCG
GCTGCGGATGGAGCGCCGGCGGCTGGAACGTCTGGCGCATGCGGCGCTGTTCACCATCGATCTGACAGAGCGTCCACGGC
CGGCCCCCAGGGTCGCGCCCGCTCCGGAGCCTGTCGCCGCGCCACCCGAGCCGCCGCCGGCCCCGGAACTCCCCCTCGAT
CTGCCGCCGACCCCGACGGTCGTGCGCCGCCGTGCGCCGAAGGAGGCGGAGCGCCGGCCGGAGGGCACGCCCGGAACGCC
GCCGCCCCGTCTCGACGCGCCCGAAGGGGCGCCGGATGATCTCAGGCGGATCAAGGGCATCGGCCCGCAGAATGCCCGGC
GCCTCAACGAACTCGGCATCTACCATCTGCGTCAGATCGCGGCCTGGACGCCCGACGAGGTGCGCTGGGTGGGCGCAGCG
CTGGCCTTTCCGGGCCGCATCGAGCGCGAGGGCTGGGTGGCGCAGGCGCAGGCGCTTGTCGCCGAAGATCAGGGCACGGC
GGAGTAG

Upstream 100 bases:

>100_bases
CCATGGTCTATCTGTTTCTAAATCTCTGGCCCTATGAGCTTCTGGCGCTCGGGCTCGGCTTCGCCACCGTCTATCTGGCG
TTCCGTCCGAGGGCGCGCCC

Downstream 100 bases:

>100_bases
TCAGTCCACCCGCTCGATGCCGCTCCGGTCAAGCCGCGCCAGCGCGTCCCGCGCCCGTGTGCCGGAGATGATGATGTCGG
GCGCGATGTCCAGCAGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MISFEVDVALLLFAAFLIGGAAAYGLRLRMERRRLERLAHAALFTIDLTERPRPAPRVAPAPEPVAAPPEPPPAPELPLD
LPPTPTVVRRRAPKEAERRPEGTPGTPPPRLDAPEGAPDDLRRIKGIGPQNARRLNELGIYHLRQIAAWTPDEVRWVGAA
LAFPGRIEREGWVAQAQALVAEDQGTAE

Sequences:

>Translated_188_residues
MISFEVDVALLLFAAFLIGGAAAYGLRLRMERRRLERLAHAALFTIDLTERPRPAPRVAPAPEPVAAPPEPPPAPELPLD
LPPTPTVVRRRAPKEAERRPEGTPGTPPPRLDAPEGAPDDLRRIKGIGPQNARRLNELGIYHLRQIAAWTPDEVRWVGAA
LAFPGRIEREGWVAQAQALVAEDQGTAE
>Mature_188_residues
MISFEVDVALLLFAAFLIGGAAAYGLRLRMERRRLERLAHAALFTIDLTERPRPAPRVAPAPEPVAAPPEPPPAPELPLD
LPPTPTVVRRRAPKEAERRPEGTPGTPPPRLDAPEGAPDDLRRIKGIGPQNARRLNELGIYHLRQIAAWTPDEVRWVGAA
LAFPGRIEREGWVAQAQALVAEDQGTAE

Specific function: This protein binds to 23S rRNA in the presence of protein L20 [H]

COG id: COG3743

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001787 [H]

Pfam domain/function: PF00829 Ribosomal_L21p [H]

EC number: NA

Molecular weight: Translated: 20561; Mature: 20561

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISFEVDVALLLFAAFLIGGAAAYGLRLRMERRRLERLAHAALFTIDLTERPRPAPRVAP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCC
APEPVAAPPEPPPAPELPLDLPPTPTVVRRRAPKEAERRPEGTPGTPPPRLDAPEGAPDD
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCHHH
LRRIKGIGPQNARRLNELGIYHLRQIAAWTPDEVRWVGAALAFPGRIEREGWVAQAQALV
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
AEDQGTAE
HCCCCCCC
>Mature Secondary Structure
MISFEVDVALLLFAAFLIGGAAAYGLRLRMERRRLERLAHAALFTIDLTERPRPAPRVAP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCC
APEPVAAPPEPPPAPELPLDLPPTPTVVRRRAPKEAERRPEGTPGTPPPRLDAPEGAPDD
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCHHH
LRRIKGIGPQNARRLNELGIYHLRQIAAWTPDEVRWVGAALAFPGRIEREGWVAQAQALV
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
AEDQGTAE
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA