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The map label for this gene is sigK [H]

Identifier: 158422826

GI number: 158422826

Start: 1344015

End: 1344551

Strand: Direct

Name: sigK [H]

Synonym: AZC_1202

Alternate gene names: 158422826

Gene position: 1344015-1344551 (Clockwise)

Preceding gene: 158422825

Following gene: 158422827

Centisome position: 25.03

GC content: 68.53

Gene sequence:

>537_bases
GTGACGAGCGCTGAACGCCTGACCCCGCTCCTCGCCGCCATCGCGGAGCGCGACCTCGACGCCATGGAACAGCTCTACAA
GCTGTCCAGTCCGAAACTCTATGGCCTGTGCCTGCGCATCCTGCGCCGGCCGGAACTGGCGCGCGCCGCCCTCAAGAGCG
CCTATCTGCGCGTGTGGAAGAGCGCCAGGACGGCCCCGACGGACCTCGACCCGCTCGCCTGGCTCGTGTGCGTGACCCGC
GAGGCGGCGCTGGAGATGGCGCGGACCATGGAGAATACGGGCGAGGCCTGGGAGCCCTTCTCGGTGGAGGACCCGGCGGA
CGATCCGCTCGCAGCGCCCGCGCATTCGCCCGAACTGAAGCGCCTGCTCGCCTGCCTCGGCACCTTGTCGGAGGAGCGCC
GGCGCATGTTCCTGCTCGCTTATTATGACGGCTGGAGCCGCGAGGCGCTGTCCGTCTATTTCGACGCCCCCATGCCCACC
ATCAGCACCTGGCTGAAGCGCAGCGTGGCCGAGATCGACGAGTGTCTGGCCAAATGA

Upstream 100 bases:

>100_bases
CGCCGCCTCCCTTGCCTTGAATGATCCGGTCTGGTGGCGGAACCACCCCTTCGGGGTCCCGTTGCCGTGGGTCGGGCCCC
CACCATGGGACTGAACCGTC

Downstream 100 bases:

>100_bases
ACCTCTCCGAGGACGATCGTCAGTTCGTCGCCGAATATGTGCTCGGCACGCTTCCGGCCGCTCTGCGGCTGATGATCCGC
AGCCGGATCGAGGAGGAGCG

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MTSAERLTPLLAAIAERDLDAMEQLYKLSSPKLYGLCLRILRRPELARAALKSAYLRVWKSARTAPTDLDPLAWLVCVTR
EAALEMARTMENTGEAWEPFSVEDPADDPLAAPAHSPELKRLLACLGTLSEERRRMFLLAYYDGWSREALSVYFDAPMPT
ISTWLKRSVAEIDECLAK

Sequences:

>Translated_178_residues
MTSAERLTPLLAAIAERDLDAMEQLYKLSSPKLYGLCLRILRRPELARAALKSAYLRVWKSARTAPTDLDPLAWLVCVTR
EAALEMARTMENTGEAWEPFSVEDPADDPLAAPAHSPELKRLLACLGTLSEERRRMFLLAYYDGWSREALSVYFDAPMPT
ISTWLKRSVAEIDECLAK
>Mature_177_residues
TSAERLTPLLAAIAERDLDAMEQLYKLSSPKLYGLCLRILRRPELARAALKSAYLRVWKSARTAPTDLDPLAWLVCVTRE
AALEMARTMENTGEAWEPFSVEDPADDPLAAPAHSPELKRLLACLGTLSEERRRMFLLAYYDGWSREALSVYFDAPMPTI
STWLKRSVAEIDECLAK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 20075; Mature: 19944

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSAERLTPLLAAIAERDLDAMEQLYKLSSPKLYGLCLRILRRPELARAALKSAYLRVWK
CCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SARTAPTDLDPLAWLVCVTREAALEMARTMENTGEAWEPFSVEDPADDPLAAPAHSPELK
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
RLLACLGTLSEERRRMFLLAYYDGWSREALSVYFDAPMPTISTWLKRSVAEIDECLAK
HHHHHHHHHHHHHHHEEEEEEECCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSAERLTPLLAAIAERDLDAMEQLYKLSSPKLYGLCLRILRRPELARAALKSAYLRVWK
CCHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SARTAPTDLDPLAWLVCVTREAALEMARTMENTGEAWEPFSVEDPADDPLAAPAHSPELK
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
RLLACLGTLSEERRRMFLLAYYDGWSREALSVYFDAPMPTISTWLKRSVAEIDECLAK
HHHHHHHHHHHHHHHEEEEEEECCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA