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The map label for this gene is ygdK [C]

Identifier: 158422715

GI number: 158422715

Start: 1218867

End: 1219337

Strand: Reverse

Name: ygdK [C]

Synonym: AZC_1091

Alternate gene names: 158422715

Gene position: 1219337-1218867 (Counterclockwise)

Preceding gene: 158422716

Following gene: 158422711

Centisome position: 22.71

GC content: 68.79

Gene sequence:

>471_bases
GTGCGCCCGGCCAGACGACGAGAACGGACACTTTCCATGACCAAGCCCAAGACCGCCGAAGACCTGATCGAGGACTTCGA
GCTTCTGGACAATTGGGAAGACCGTTACCGCTTCGTGATCGAACTCGGCCGCAGCCTGCCGGACCTGCCGGAGGAGCTGC
GCACGGAAGCCAACAAGGTGCAGGGCTGCGCCAGCCAAGTGTGGCTCGTGGGCGCGCGCCGCGACACGGCGGATGGCCCG
GTGCTGGACTATCGGGGCGACTCCGACGCCCATATCGTGCGCGGCCTCGTGGCGGTGCTGCTCACCGTGCTCTCCGGCCA
TACGGCCAAGGAGATCCTCGAGACCGACGCGCTGGCGGTGTTCCGTCGCATCGGGCTCGAAGGCCATCTCACGCCGCAGC
GCTCCAACGGCCTGCGCTCCATGGTGGAGCGCATCCGCGCCGACGCCCGGGCCGCCCTCGCCACCGCCTGA

Upstream 100 bases:

>100_bases
CCCGCCCCCGGCATGCCCCTGCCCCCGCGCCGTCCCGCCTGATCTCCCGCACGCTTTCGCAAGCGCGTGCTGCCGCCTAT
ATGAGGCGGAACGCGCACCC

Downstream 100 bases:

>100_bases
GCGGCAGAGCCCTCAGGCCGCGACGCCCTGGGGACCGGCGCCATAGGGATCGGCACCATAGCGGTTGGGGCCGGGCGTGC
CCCGCTGCAGCGCGAAGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MRPARRRERTLSMTKPKTAEDLIEDFELLDNWEDRYRFVIELGRSLPDLPEELRTEANKVQGCASQVWLVGARRDTADGP
VLDYRGDSDAHIVRGLVAVLLTVLSGHTAKEILETDALAVFRRIGLEGHLTPQRSNGLRSMVERIRADARAALATA

Sequences:

>Translated_156_residues
MRPARRRERTLSMTKPKTAEDLIEDFELLDNWEDRYRFVIELGRSLPDLPEELRTEANKVQGCASQVWLVGARRDTADGP
VLDYRGDSDAHIVRGLVAVLLTVLSGHTAKEILETDALAVFRRIGLEGHLTPQRSNGLRSMVERIRADARAALATA
>Mature_156_residues
MRPARRRERTLSMTKPKTAEDLIEDFELLDNWEDRYRFVIELGRSLPDLPEELRTEANKVQGCASQVWLVGARRDTADGP
VLDYRGDSDAHIVRGLVAVLLTVLSGHTAKEILETDALAVFRRIGLEGHLTPQRSNGLRSMVERIRADARAALATA

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=133, Percent_Identity=42.8571428571429, Blast_Score=109, Evalue=8e-26,
Organism=Escherichia coli, GI1787969, Length=122, Percent_Identity=43.4426229508197, Blast_Score=109, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 17504; Mature: 17504

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPARRRERTLSMTKPKTAEDLIEDFELLDNWEDRYRFVIELGRSLPDLPEELRTEANKV
CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
QGCASQVWLVGARRDTADGPVLDYRGDSDAHIVRGLVAVLLTVLSGHTAKEILETDALAV
HHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
FRRIGLEGHLTPQRSNGLRSMVERIRADARAALATA
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRPARRRERTLSMTKPKTAEDLIEDFELLDNWEDRYRFVIELGRSLPDLPEELRTEANKV
CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
QGCASQVWLVGARRDTADGPVLDYRGDSDAHIVRGLVAVLLTVLSGHTAKEILETDALAV
HHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
FRRIGLEGHLTPQRSNGLRSMVERIRADARAALATA
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7756693; 11481430 [H]