| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
Click here to switch to the map view.
The map label for this gene is thrS [H]
Identifier: 158422571
GI number: 158422571
Start: 1056677
End: 1058587
Strand: Direct
Name: thrS [H]
Synonym: AZC_0947
Alternate gene names: 158422571
Gene position: 1056677-1058587 (Clockwise)
Preceding gene: 158422570
Following gene: 158422572
Centisome position: 19.68
GC content: 65.57
Gene sequence:
>1911_bases GTGGCCGCAGCCATTTCCAAGTCGCTCCTCAAGAAGGCGGTTGCCGTGACCCTCGACGGGGCGCTGACCGACCTGTCCGA GCCGATCACCAAGGACGCCCGCATCGAGATCGTGACGCGCGATGATCCGCGCGCGCTCGAACTCATCCGCCACGACGCCG CCCATGTGCTGGCCGAGGCGGTGCAGGAGCTGTTTCCGGGCACGCAGGTGACCATCGGCCCGGTGATCGAGAACGGCTTC TATTACGATTTCGCCCGTAACGAGCCCTTCACCACCGACGATCTGCCGAAGATCGAGGCGAAGATGAAGGAGATCATCGC CCGCGACAAACCCTTCACCAAGGAAGTGTGGTCGCGTGACGAGGCCAAGCGCGTGTTCCGCGACAAGGGCGAGGCGTTCA AGGTCGAGCTGGTGGATGCCATCCCCGAGGACCAGGACGTCAAGATCTACAAGCAGGGCGAGTGGTTCGACCTTTGCCGT GGGCCGCACATGCCCTCCACGGGCAAGATCGGCACCGCCTTCAAGCTCATGAAGGTGGCCGGCGCCTATTGGCGCGGCGA CAGCAACAACCCCATGCTCACCCGCATCTACGGCACGGCGTGGAAGGACCAGAGCGAGCTCGACGCCTATCTGCACCGTC TGGAAGAGGCGGAGAAGCGCGACCATCGCCGCCTCGGCCGGGAGATGGACCTCTTCCACTTCCAGGAGGAAGGGCCGGGC GTCGTCTTCTGGCACCCGAAGGGCTGGAGCCTGTTCCAGGGCCTCGTCTCCTACATGCGCCGCCGCCTCAAGGCCGATTA CAATGAGGTCAATGCCCCGCAGGTGCTCGACAAGAGCCTGTGGGAGACCTCCGGCCACTGGGGCTGGTACAAGGAGAACA TGTTCAAGGTGCAGTCGGCCGGCGAAGAGACCGGCGACGAGCGCGTGTTCGCCCTGAAGCCCATGAACTGCCCCGGCCAT GTGCAGATCTTCAAGCATGGCCTGAAGTCCTATCGCGACCTGCCGCTGCGCCTCGCCGAGTTCGGCGCGGTGCACCGCTA CGAGCCCTCGGGCGCGTTGCACGGCCTCATGCGCGTGCGCGGCTTCACGCAGGACGACGCCCATGTCTTCTGCACCGAGG AGCAGATGGCGGCGGAGTGCCTGAAGATCAACGATCTGATCCTCTCCACCTATGCCGACTTCGGCTTCGAGGAGATCACG GTGAAGCTGTCCACCCGCCCCGAGAAGCGCGTGGGGTCCGACGCGGTGTGGGATCATGCCGAGGACGTCATGTCCCGCGT GCTCAAGCAGATCGAGGCGGAATCCGGCGGGCGCATCAAGACCGGCATCCTGCCGGGCGAGGGCGCCTTCTACGGTCCGA AGTTCGAGTATACGCTCTCGGACGCCATCGGCCGTGAGTGGCAGTGCGGCACCACGCAGGTGGACTTCAACCTGCCGGAG CGCTTCGGCGCCTTCTATGTGGATGCCGACGGCCAGAAGAAGACGCCGGTGATGATCCACCGCGCCATCTGCGGCTCCAT GGAGCGCTTCACCGGCATCCTGATCGAGCACTTCGCCGGTCATTTCCCGCTGTGGCTCGCCCCCGTGCAGCTCGCGGTCT GCACCATCACGCAGGAGGCGGACGACTATGCCGCCGAGGTGGCCTCCGCGGCGCGGGCGCTGGACCTGAAAGTGGAACTC GACACGCGCAACGAGAAGATCTCCTACAAGGTTCGCGAGCACTCGCTGGCCAAGATCCCGGTGCAGTTCGCGCTGGGCAA GAAGGAGGCCGCCGAGCGCACCGTCTCCATCCGCCGCCTCGGCAGCCAGGAGCAGAAGGTGCTTCCCCTGGAGGAAGCGC TGAAGCTGCTGGCGGACGAAGCCGTGCCGCCGGACCTGAAGCGCCGCGCGGCGGTTACGAAGGCCGCCTGA
Upstream 100 bases:
>100_bases GCGGGGTACGCAGGAGTGGGCAGGAGAAGAAGCCATGCTGACCTTGACCTTTCCCGATGGCGCGCAGCGCGAGTATGCCC CCGGGACCCGCGGCGCCGAT
Downstream 100 bases:
>100_bases GCGCTTCCGAAATCAGCGACGCGGGTATCATGATCCGCGTCGCCGCTTCTGGCTTGTCCCAGGCTGACTGACCCCCCTGG CGATTTCCTGCCCCTTTTGC
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS [H]
Number of amino acids: Translated: 636; Mature: 635
Protein sequence:
>636_residues MAAAISKSLLKKAVAVTLDGALTDLSEPITKDARIEIVTRDDPRALELIRHDAAHVLAEAVQELFPGTQVTIGPVIENGF YYDFARNEPFTTDDLPKIEAKMKEIIARDKPFTKEVWSRDEAKRVFRDKGEAFKVELVDAIPEDQDVKIYKQGEWFDLCR GPHMPSTGKIGTAFKLMKVAGAYWRGDSNNPMLTRIYGTAWKDQSELDAYLHRLEEAEKRDHRRLGREMDLFHFQEEGPG VVFWHPKGWSLFQGLVSYMRRRLKADYNEVNAPQVLDKSLWETSGHWGWYKENMFKVQSAGEETGDERVFALKPMNCPGH VQIFKHGLKSYRDLPLRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHVFCTEEQMAAECLKINDLILSTYADFGFEEIT VKLSTRPEKRVGSDAVWDHAEDVMSRVLKQIEAESGGRIKTGILPGEGAFYGPKFEYTLSDAIGREWQCGTTQVDFNLPE RFGAFYVDADGQKKTPVMIHRAICGSMERFTGILIEHFAGHFPLWLAPVQLAVCTITQEADDYAAEVASAARALDLKVEL DTRNEKISYKVREHSLAKIPVQFALGKKEAAERTVSIRRLGSQEQKVLPLEEALKLLADEAVPPDLKRRAAVTKAA
Sequences:
>Translated_636_residues MAAAISKSLLKKAVAVTLDGALTDLSEPITKDARIEIVTRDDPRALELIRHDAAHVLAEAVQELFPGTQVTIGPVIENGF YYDFARNEPFTTDDLPKIEAKMKEIIARDKPFTKEVWSRDEAKRVFRDKGEAFKVELVDAIPEDQDVKIYKQGEWFDLCR GPHMPSTGKIGTAFKLMKVAGAYWRGDSNNPMLTRIYGTAWKDQSELDAYLHRLEEAEKRDHRRLGREMDLFHFQEEGPG VVFWHPKGWSLFQGLVSYMRRRLKADYNEVNAPQVLDKSLWETSGHWGWYKENMFKVQSAGEETGDERVFALKPMNCPGH VQIFKHGLKSYRDLPLRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHVFCTEEQMAAECLKINDLILSTYADFGFEEIT VKLSTRPEKRVGSDAVWDHAEDVMSRVLKQIEAESGGRIKTGILPGEGAFYGPKFEYTLSDAIGREWQCGTTQVDFNLPE RFGAFYVDADGQKKTPVMIHRAICGSMERFTGILIEHFAGHFPLWLAPVQLAVCTITQEADDYAAEVASAARALDLKVEL DTRNEKISYKVREHSLAKIPVQFALGKKEAAERTVSIRRLGSQEQKVLPLEEALKLLADEAVPPDLKRRAAVTKAA >Mature_635_residues AAAISKSLLKKAVAVTLDGALTDLSEPITKDARIEIVTRDDPRALELIRHDAAHVLAEAVQELFPGTQVTIGPVIENGFY YDFARNEPFTTDDLPKIEAKMKEIIARDKPFTKEVWSRDEAKRVFRDKGEAFKVELVDAIPEDQDVKIYKQGEWFDLCRG PHMPSTGKIGTAFKLMKVAGAYWRGDSNNPMLTRIYGTAWKDQSELDAYLHRLEEAEKRDHRRLGREMDLFHFQEEGPGV VFWHPKGWSLFQGLVSYMRRRLKADYNEVNAPQVLDKSLWETSGHWGWYKENMFKVQSAGEETGDERVFALKPMNCPGHV QIFKHGLKSYRDLPLRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHVFCTEEQMAAECLKINDLILSTYADFGFEEITV KLSTRPEKRVGSDAVWDHAEDVMSRVLKQIEAESGGRIKTGILPGEGAFYGPKFEYTLSDAIGREWQCGTTQVDFNLPER FGAFYVDADGQKKTPVMIHRAICGSMERFTGILIEHFAGHFPLWLAPVQLAVCTITQEADDYAAEVASAARALDLKVELD TRNEKISYKVREHSLAKIPVQFALGKKEAAERTVSIRRLGSQEQKVLPLEEALKLLADEAVPPDLKRRAAVTKAA
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI38570111, Length=602, Percent_Identity=38.8704318936877, Blast_Score=427, Evalue=1e-119, Organism=Homo sapiens, GI38202255, Length=602, Percent_Identity=38.8704318936877, Blast_Score=426, Evalue=1e-119, Organism=Homo sapiens, GI20070344, Length=634, Percent_Identity=37.8548895899054, Blast_Score=418, Evalue=1e-117, Organism=Escherichia coli, GI1788013, Length=630, Percent_Identity=48.8888888888889, Blast_Score=637, Evalue=0.0, Organism=Caenorhabditis elegans, GI71984192, Length=602, Percent_Identity=39.5348837209302, Blast_Score=446, Evalue=1e-125, Organism=Caenorhabditis elegans, GI71984184, Length=602, Percent_Identity=39.5348837209302, Blast_Score=446, Evalue=1e-125, Organism=Saccharomyces cerevisiae, GI6322112, Length=643, Percent_Identity=38.8802488335925, Blast_Score=441, Evalue=1e-124, Organism=Saccharomyces cerevisiae, GI6322654, Length=405, Percent_Identity=38.5185185185185, Blast_Score=272, Evalue=1e-73, Organism=Drosophila melanogaster, GI24583842, Length=628, Percent_Identity=37.8980891719745, Blast_Score=427, Evalue=1e-119, Organism=Drosophila melanogaster, GI28574141, Length=628, Percent_Identity=37.8980891719745, Blast_Score=427, Evalue=1e-119, Organism=Drosophila melanogaster, GI24583839, Length=628, Percent_Identity=37.8980891719745, Blast_Score=427, Evalue=1e-119,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR012675 - InterPro: IPR004095 - InterPro: IPR012676 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF03129 HGTP_anticodon; PF02824 TGS; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD [H]
EC number: =6.1.1.3 [H]
Molecular weight: Translated: 71864; Mature: 71732
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAAISKSLLKKAVAVTLDGALTDLSEPITKDARIEIVTRDDPRALELIRHDAAHVLAEA CCHHHHHHHHHHHHHHEECCHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH VQELFPGTQVTIGPVIENGFYYDFARNEPFTTDDLPKIEAKMKEIIARDKPFTKEVWSRD HHHHCCCCEEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCH EAKRVFRDKGEAFKVELVDAIPEDQDVKIYKQGEWFDLCRGPHMPSTGKIGTAFKLMKVA HHHHHHHCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHCCCCCCCCCCCHHHHHHHHHH GAYWRGDSNNPMLTRIYGTAWKDQSELDAYLHRLEEAEKRDHRRLGREMDLFHFQEEGPG HHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCE VVFWHPKGWSLFQGLVSYMRRRLKADYNEVNAPQVLDKSLWETSGHWGWYKENMFKVQSA EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHC GEETGDERVFALKPMNCPGHVQIFKHGLKSYRDLPLRLAEFGAVHRYEPSGALHGLMRVR CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCEEECCCHHHHHHHHHC GFTQDDAHVFCTEEQMAAECLKINDLILSTYADFGFEEITVKLSTRPEKRVGSDAVWDHA CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHCCCCHHHHHH EDVMSRVLKQIEAESGGRIKTGILPGEGAFYGPKFEYTLSDAIGREWQCGTTQVDFNLPE HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEHHHCCCCCCCCCEEEECCCHH RFGAFYVDADGQKKTPVMIHRAICGSMERFTGILIEHFAGHFPLWLAPVQLAVCTITQEA HHCEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHEEEEECCH DDYAAEVASAARALDLKVELDTRNEKISYKVREHSLAKIPVQFALGKKEAAERTVSIRRL HHHHHHHHHHHHHEEEEEEECCCCCEEEEEEHHCCHHHCCHHHHCCCHHHHHHHHHHHHC GSQEQKVLPLEEALKLLADEAVPPDLKRRAAVTKAA CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCC >Mature Secondary Structure AAAISKSLLKKAVAVTLDGALTDLSEPITKDARIEIVTRDDPRALELIRHDAAHVLAEA CHHHHHHHHHHHHHHEECCHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH VQELFPGTQVTIGPVIENGFYYDFARNEPFTTDDLPKIEAKMKEIIARDKPFTKEVWSRD HHHHCCCCEEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCH EAKRVFRDKGEAFKVELVDAIPEDQDVKIYKQGEWFDLCRGPHMPSTGKIGTAFKLMKVA HHHHHHHCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHCCCCCCCCCCCHHHHHHHHHH GAYWRGDSNNPMLTRIYGTAWKDQSELDAYLHRLEEAEKRDHRRLGREMDLFHFQEEGPG HHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCE VVFWHPKGWSLFQGLVSYMRRRLKADYNEVNAPQVLDKSLWETSGHWGWYKENMFKVQSA EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHC GEETGDERVFALKPMNCPGHVQIFKHGLKSYRDLPLRLAEFGAVHRYEPSGALHGLMRVR CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCEEECCCHHHHHHHHHC GFTQDDAHVFCTEEQMAAECLKINDLILSTYADFGFEEITVKLSTRPEKRVGSDAVWDHA CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHCCCCHHHHHH EDVMSRVLKQIEAESGGRIKTGILPGEGAFYGPKFEYTLSDAIGREWQCGTTQVDFNLPE HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEHHHCCCCCCCCCEEEECCCHH RFGAFYVDADGQKKTPVMIHRAICGSMERFTGILIEHFAGHFPLWLAPVQLAVCTITQEA HHCEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHEEEEECCH DDYAAEVASAARALDLKVELDTRNEKISYKVREHSLAKIPVQFALGKKEAAERTVSIRRL HHHHHHHHHHHHHEEEEEEECCCCCEEEEEEHHCCHHHCCHHHHCCCHHHHHHHHHHHHC GSQEQKVLPLEEALKLLADEAVPPDLKRRAAVTKAA CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA