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The map label for this gene is xerD [H]

Identifier: 158422452

GI number: 158422452

Start: 934780

End: 935934

Strand: Reverse

Name: xerD [H]

Synonym: AZC_0828

Alternate gene names: 158422452

Gene position: 935934-934780 (Counterclockwise)

Preceding gene: 158422453

Following gene: 158422449

Centisome position: 17.43

GC content: 64.5

Gene sequence:

>1155_bases
GTGGACCTTCGACGAAGCCGCGCTTCGCAGCTGGATCAAGGAGCGCACAACATGCCCCCAAAACCCAAGGCACCGAAGCA
CACCTACTGGCGTGGCGACACGCTATGGGCACGATTTACCGTTGCAGGTCGCGAAATCCGTGAAAGCCTCCGAACAGGCT
CTGCGAAGGTTGCGGCGCGGCGCGTAGCCGAAATGCGGGAAAAGGCCGTCGGCGCGACCCGCTTCGGCGAGACACGGGTG
CTCTGGGACGATGCCGTTACGGCCTGGGCCTCATTCATCCCCCGCCAGGTCGGATCACCTCGAACGGTGAAACGCTACGC
GGATTCGCTCTCGATCGCCGGCCGACACTTCAGCACGCTGCCCATTGCCGACATAGACAAGGACGCCATCAATCGGTTCG
TGGCGGCGCGGCGTGCGGAAGGCGTGACCAACGCGACGATCCGGCGTGACCTCCAGGCGATTTCCTCCCTCCTCGACTTC
TCCGAGGATGAGGGATGGCGGGACGGCAACCCCGCTCTCGACAAGATGCGCCGGCTGAAGGAGCACCGCGATCCGATCAT
GCTGCCCGACGACGGCGATTACGCGTTTGTGCTCAGCCGACTTCAGGAAGGGCATGCCGAGATGCTGCGGGCTGCCCGGG
CGACGGGAATGCGGCAGGACGAACTGGCGCGAGCCGAGCGGCGCCATTTCAACGCGGCCAACTCCAGCCTGCTCGTCCGC
GGCAAGGGGAACAAGCAGCGCACGATCAGCCTGTCAGCCGAGGCGGCGGCGATCTTCTCCCGCCAGCCCGTCTCCCTGGC
CTGCCCCCACATCTTCCATCACGCCGGCAAGCCCATCACGAAGGCCGCCTTCATTTTCTCCCGCGCACGGCGGGCGGCAC
AGAAGGCGGCACAGAAAGCGGGCATGGAATTCCGTGGATTTCGGTTCCACGACATGCGCCACCTCTACGCCGTCGAGTTC
CTCCGGAGCGGCGGCGACATCTACACCCTGAAGGAGCATCTGCGGCATTCCTCAGTGAAGACAACCGAGATGTATCTTGA
GTTCCTTACGCCGGAGGAGGCCGAACTCGCCAAGCGTGGCCGCAAGGCCGGTCTTGACGGACAGGGAGGCTTGATGGAAG
AAGGCCGGCGAGCCTCGAAAGGTCGTGAGGTCTGA

Upstream 100 bases:

>100_bases
GTGCTCCACATGCCGCGGCGATCCTTGGCGTCGAGACGAGGACCGTGCAAGCCTTGGCAGCGCGCGGCGAGTTACCAGGG
GCCGCCAAGATCGGCGGCCT

Downstream 100 bases:

>100_bases
GCCATCGGCACAAACGACGGCACATGACAATCGGTCTGGCGAGTGCCGTTCGACTTGTAAGTGATTGATTTTTTGGTGAC
TTCCAAGTTCCGGGCCGGCT

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MDLRRSRASQLDQGAHNMPPKPKAPKHTYWRGDTLWARFTVAGREIRESLRTGSAKVAARRVAEMREKAVGATRFGETRV
LWDDAVTAWASFIPRQVGSPRTVKRYADSLSIAGRHFSTLPIADIDKDAINRFVAARRAEGVTNATIRRDLQAISSLLDF
SEDEGWRDGNPALDKMRRLKEHRDPIMLPDDGDYAFVLSRLQEGHAEMLRAARATGMRQDELARAERRHFNAANSSLLVR
GKGNKQRTISLSAEAAAIFSRQPVSLACPHIFHHAGKPITKAAFIFSRARRAAQKAAQKAGMEFRGFRFHDMRHLYAVEF
LRSGGDIYTLKEHLRHSSVKTTEMYLEFLTPEEAELAKRGRKAGLDGQGGLMEEGRRASKGREV

Sequences:

>Translated_384_residues
MDLRRSRASQLDQGAHNMPPKPKAPKHTYWRGDTLWARFTVAGREIRESLRTGSAKVAARRVAEMREKAVGATRFGETRV
LWDDAVTAWASFIPRQVGSPRTVKRYADSLSIAGRHFSTLPIADIDKDAINRFVAARRAEGVTNATIRRDLQAISSLLDF
SEDEGWRDGNPALDKMRRLKEHRDPIMLPDDGDYAFVLSRLQEGHAEMLRAARATGMRQDELARAERRHFNAANSSLLVR
GKGNKQRTISLSAEAAAIFSRQPVSLACPHIFHHAGKPITKAAFIFSRARRAAQKAAQKAGMEFRGFRFHDMRHLYAVEF
LRSGGDIYTLKEHLRHSSVKTTEMYLEFLTPEEAELAKRGRKAGLDGQGGLMEEGRRASKGREV
>Mature_384_residues
MDLRRSRASQLDQGAHNMPPKPKAPKHTYWRGDTLWARFTVAGREIRESLRTGSAKVAARRVAEMREKAVGATRFGETRV
LWDDAVTAWASFIPRQVGSPRTVKRYADSLSIAGRHFSTLPIADIDKDAINRFVAARRAEGVTNATIRRDLQAISSLLDF
SEDEGWRDGNPALDKMRRLKEHRDPIMLPDDGDYAFVLSRLQEGHAEMLRAARATGMRQDELARAERRHFNAANSSLLVR
GKGNKQRTISLSAEAAAIFSRQPVSLACPHIFHHAGKPITKAAFIFSRARRAAQKAAQKAGMEFRGFRFHDMRHLYAVEF
LRSGGDIYTLKEHLRHSSVKTTEMYLEFLTPEEAELAKRGRKAGLDGQGGLMEEGRRASKGREV

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43186; Mature: 43186

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLRRSRASQLDQGAHNMPPKPKAPKHTYWRGDTLWARFTVAGREIRESLRTGSAKVAAR
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHH
RVAEMREKAVGATRFGETRVLWDDAVTAWASFIPRQVGSPRTVKRYADSLSIAGRHFSTL
HHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
PIADIDKDAINRFVAARRAEGVTNATIRRDLQAISSLLDFSEDEGWRDGNPALDKMRRLK
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
EHRDPIMLPDDGDYAFVLSRLQEGHAEMLRAARATGMRQDELARAERRHFNAANSSLLVR
HHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
GKGNKQRTISLSAEAAAIFSRQPVSLACPHIFHHAGKPITKAAFIFSRARRAAQKAAQKA
ECCCCCEEEEECHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
GMEFRGFRFHDMRHLYAVEFLRSGGDIYTLKEHLRHSSVKTTEMYLEFLTPEEAELAKRG
CCCCCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHH
RKAGLDGQGGLMEEGRRASKGREV
HHCCCCCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MDLRRSRASQLDQGAHNMPPKPKAPKHTYWRGDTLWARFTVAGREIRESLRTGSAKVAAR
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHH
RVAEMREKAVGATRFGETRVLWDDAVTAWASFIPRQVGSPRTVKRYADSLSIAGRHFSTL
HHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
PIADIDKDAINRFVAARRAEGVTNATIRRDLQAISSLLDFSEDEGWRDGNPALDKMRRLK
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
EHRDPIMLPDDGDYAFVLSRLQEGHAEMLRAARATGMRQDELARAERRHFNAANSSLLVR
HHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
GKGNKQRTISLSAEAAAIFSRQPVSLACPHIFHHAGKPITKAAFIFSRARRAAQKAAQKA
ECCCCCEEEEECHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
GMEFRGFRFHDMRHLYAVEFLRSGGDIYTLKEHLRHSSVKTTEMYLEFLTPEEAELAKRG
CCCCCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHH
RKAGLDGQGGLMEEGRRASKGREV
HHCCCCCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]