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The map label for this gene is pdtaR [H]

Identifier: 158422316

GI number: 158422316

Start: 766094

End: 766738

Strand: Reverse

Name: pdtaR [H]

Synonym: AZC_0692

Alternate gene names: 158422316

Gene position: 766738-766094 (Counterclockwise)

Preceding gene: 158422317

Following gene: 158422315

Centisome position: 14.28

GC content: 64.19

Gene sequence:

>645_bases
GTGCGTGCACACTGGCGCCGTTGCGTTTCGTGCTTCGTCAGCCCCAAGAGCTTCATGTCCAGCGACCTTCAGCTCAGGAT
CGTCATCGTCGATGAAAGTCCGGTGCGGGCCGCGATCCTCAGCGAGGGGCTGCACGAGGCTGGCTATGTGAATGTGCTGC
GCCTCGAGGGCCGCACCAATCTTCTCGAGCGCATCTATGCCATCGATCCGGACGTGATCCTCATCGACCTTGAGGACCCG
AGCCGCGACGTCATCGAGCAGATGCTGCACGTCTCCCGCGAGGTGAAGCGCCCCGTCGCCATGTTCGTGGACCAGTCGGA
CGGGGAGACCATCCAGCAGGCCATCGAGGCGGGCGTCGCCTCTTATGTGGTGGACGGCCTGCGCAAGGAGCGGGTGCGGC
CCATTGTGGAGACCACCATTTCCCGCTTCCGCGCCTTCGCCCGCCTGAAGGCGGAGCTGGAGGAGGCGAAAAGCCAGCTC
GAGGAACGCAAGACGGTGGACCGGGCCAAGGGCCTGCTGATGAAGATGAAGGGCATCAGCGAGGAAGACGCCTACAGCCT
CCTGCGCCGCACCGCGATGAACGAGAAGAAGCGCATCGCCGACATCGCCCAATCCATCATCACCGCCGCGGAGCTGCTGC
GATGA

Upstream 100 bases:

>100_bases
CATCGATTATGCCGGAGCGACAGCCGCGCCCTGACCGATCCGGCCGCCGGCGGGGACATCCCGTCTGTGCCCTTAAAAAA
CGCTACGCAACGGTGCCCGA

Downstream 100 bases:

>100_bases
AACGGCTGTCCATCGGCTTCATCCCCCTCACCGACGCCGCCGTGCTGATCGCCGCCGCCGAGCGCGGCTTCGCCATGGCC
GAGGGCATCGAGATCGAGCT

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MRAHWRRCVSCFVSPKSFMSSDLQLRIVIVDESPVRAAILSEGLHEAGYVNVLRLEGRTNLLERIYAIDPDVILIDLEDP
SRDVIEQMLHVSREVKRPVAMFVDQSDGETIQQAIEAGVASYVVDGLRKERVRPIVETTISRFRAFARLKAELEEAKSQL
EERKTVDRAKGLLMKMKGISEEDAYSLLRRTAMNEKKRIADIAQSIITAAELLR

Sequences:

>Translated_214_residues
MRAHWRRCVSCFVSPKSFMSSDLQLRIVIVDESPVRAAILSEGLHEAGYVNVLRLEGRTNLLERIYAIDPDVILIDLEDP
SRDVIEQMLHVSREVKRPVAMFVDQSDGETIQQAIEAGVASYVVDGLRKERVRPIVETTISRFRAFARLKAELEEAKSQL
EERKTVDRAKGLLMKMKGISEEDAYSLLRRTAMNEKKRIADIAQSIITAAELLR
>Mature_214_residues
MRAHWRRCVSCFVSPKSFMSSDLQLRIVIVDESPVRAAILSEGLHEAGYVNVLRLEGRTNLLERIYAIDPDVILIDLEDP
SRDVIEQMLHVSREVKRPVAMFVDQSDGETIQQAIEAGVASYVVDGLRKERVRPIVETTISRFRAFARLKAELEEAKSQL
EERKTVDRAKGLLMKMKGISEEDAYSLLRRTAMNEKKRIADIAQSIITAAELLR

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24324; Mature: 24324

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAHWRRCVSCFVSPKSFMSSDLQLRIVIVDESPVRAAILSEGLHEAGYVNVLRLEGRTN
CCHHHHHHHHHHCCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH
LLERIYAIDPDVILIDLEDPSRDVIEQMLHVSREVKRPVAMFVDQSDGETIQQAIEAGVA
HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
SYVVDGLRKERVRPIVETTISRFRAFARLKAELEEAKSQLEERKTVDRAKGLLMKMKGIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EEDAYSLLRRTAMNEKKRIADIAQSIITAAELLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MRAHWRRCVSCFVSPKSFMSSDLQLRIVIVDESPVRAAILSEGLHEAGYVNVLRLEGRTN
CCHHHHHHHHHHCCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH
LLERIYAIDPDVILIDLEDPSRDVIEQMLHVSREVKRPVAMFVDQSDGETIQQAIEAGVA
HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
SYVVDGLRKERVRPIVETTISRFRAFARLKAELEEAKSQLEERKTVDRAKGLLMKMKGIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EEDAYSLLRRTAMNEKKRIADIAQSIITAAELLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]