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The map label for this gene is fliN [H]

Identifier: 158422265

GI number: 158422265

Start: 713122

End: 713484

Strand: Reverse

Name: fliN [H]

Synonym: AZC_0641

Alternate gene names: 158422265

Gene position: 713484-713122 (Counterclockwise)

Preceding gene: 158422266

Following gene: 158422264

Centisome position: 13.29

GC content: 65.84

Gene sequence:

>363_bases
ATGGCACCGCCCGATGATTTCGACAAGGACACCGCCCAGGACGAAGCGCTCTTCTCCAAGGCGCTGAAAGACAACGGCAA
GGAAGAGACCATCGGCACCGGCCAGGGCCTCGAATCCGTGATGCGCATCCCCGTGCTGCTGCAGGTGGTGCTCGGCTCGG
CCAGCATGCCGGTGGCCAATCTCATGAAGCTCGGTCGCGGCGCCATCGTGCCGCTGGACCATCGCGTGGGCGAACCCGTG
GACGTGGTGGTGAACGGCCGCATCATCGCCCGCGGCGAGGTGATGGTGGTGGAAGAAGACAACTCCCGTTTCGGCGTGAC
CCTCACCGAGATCGTCGGCCCCGGCGGCGCCGACCACAACTGA

Upstream 100 bases:

>100_bases
CCAGATCCGATGCGGTCGCGGCGACCGGATCGGCCCAATCTTCCACTTTCTACGGGCGCCCGAGAGCGCGCTCGGACCAG
CCAATTGACGGGAGCACCCC

Downstream 100 bases:

>100_bases
CGGCTAGCCCATGGCCCCCCAACCGCTGACCGGCAAGTCCCGCCCACTGCACGGCACGGACAAGGTGGCGGCGCTGCTCA
TGACCATGGGCACGCCGATC

Product: FliN protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MAPPDDFDKDTAQDEALFSKALKDNGKEETIGTGQGLESVMRIPVLLQVVLGSASMPVANLMKLGRGAIVPLDHRVGEPV
DVVVNGRIIARGEVMVVEEDNSRFGVTLTEIVGPGGADHN

Sequences:

>Translated_120_residues
MAPPDDFDKDTAQDEALFSKALKDNGKEETIGTGQGLESVMRIPVLLQVVLGSASMPVANLMKLGRGAIVPLDHRVGEPV
DVVVNGRIIARGEVMVVEEDNSRFGVTLTEIVGPGGADHN
>Mature_119_residues
APPDDFDKDTAQDEALFSKALKDNGKEETIGTGQGLESVMRIPVLLQVVLGSASMPVANLMKLGRGAIVPLDHRVGEPVD
VVVNGRIIARGEVMVVEEDNSRFGVTLTEIVGPGGADHN

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=83, Percent_Identity=43.3734939759036, Blast_Score=73, Evalue=6e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 12692; Mature: 12560

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPPDDFDKDTAQDEALFSKALKDNGKEETIGTGQGLESVMRIPVLLQVVLGSASMPVAN
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
LMKLGRGAIVPLDHRVGEPVDVVVNGRIIARGEVMVVEEDNSRFGVTLTEIVGPGGADHN
HHHHCCCCEEECCCCCCCCEEEEECCEEEECCCEEEEECCCCEECEEEHHEECCCCCCCC
>Mature Secondary Structure 
APPDDFDKDTAQDEALFSKALKDNGKEETIGTGQGLESVMRIPVLLQVVLGSASMPVAN
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
LMKLGRGAIVPLDHRVGEPVDVVVNGRIIARGEVMVVEEDNSRFGVTLTEIVGPGGADHN
HHHHCCCCEEECCCCCCCCEEEEECCEEEECCCEEEEECCCCEECEEEHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9161425; 11743193; 11743194 [H]