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The map label for this gene is ydeS [H]

Identifier: 158421936

GI number: 158421936

Start: 362237

End: 362836

Strand: Reverse

Name: ydeS [H]

Synonym: AZC_0312

Alternate gene names: 158421936

Gene position: 362836-362237 (Counterclockwise)

Preceding gene: 158421941

Following gene: 158421934

Centisome position: 6.76

GC content: 69.33

Gene sequence:

>600_bases
ATGACTGATGCTGCCGAGACCGCCCCGACGCGCCGCCGCACCTCCATCGGGGGCCGGCGCAACCCGGAGAGTGCCGCAGC
CATTCTCGATGCGGCAGCGGCGATCCTCGCGGAGAATGGGCTGGGCGGTTTCAGCATCGAGGCGGTCGCGCGCCGGGCGG
GCGCCGGCAAGCCAACCATCTATCGCTGGTGGCCCAACAAGGCCGCGCTGCTCATCGATGTCTATGCGCGGCAGAAGGAG
ACCGTGCTCCAGGCGGACACCGGCTCCCTGCAAGGGGATCTGGAAGACGTCCTGAGCCGGCTCTTTGATTTCTGGCGCCA
CACGCCCGCCGGCGCCGCCTTCCGCTCCATCATCGCCGAAGCCCAGTCGGACCCTGAAGCGCTGGAGCGGCTGCGCGCCT
TTCTGATCGAGCGGCGGGCCTATGTGCGCGAGATCGTCGAGCGCGGCATCGCCCGCGGCGACCTTCCGGCCGATGCGGAC
GGTGCAGCCATTGTCGAAATGCTGTTCGGCTTTGCCTGGATGCGCCTGCTGACCGGCGACCTCGGCGCTGCCGAGGACAT
CCCGCGCCGCGTACACCTCATCCTCAAGGGCGCCGCCTGA

Upstream 100 bases:

>100_bases
CGAAACGGACCGTTTCAATAAAGCTAGAATGAGGGCCCCCGCCGGTCAAGGGGCACCGGCCACATTGCCATTGCGGCGCC
CGGTGCTCTAACCAATCCCC

Downstream 100 bases:

>100_bases
GGCCCAAAGAAAAGGCCCGGCGCGCGCGAGCGGCCGGGCCTTCTCCATGCGGACGGAGAACCGCCCGGATCAAGAAACGT
CAGTTCTTCGGGGCCGCAGG

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MTDAAETAPTRRRTSIGGRRNPESAAAILDAAAAILAENGLGGFSIEAVARRAGAGKPTIYRWWPNKAALLIDVYARQKE
TVLQADTGSLQGDLEDVLSRLFDFWRHTPAGAAFRSIIAEAQSDPEALERLRAFLIERRAYVREIVERGIARGDLPADAD
GAAIVEMLFGFAWMRLLTGDLGAAEDIPRRVHLILKGAA

Sequences:

>Translated_199_residues
MTDAAETAPTRRRTSIGGRRNPESAAAILDAAAAILAENGLGGFSIEAVARRAGAGKPTIYRWWPNKAALLIDVYARQKE
TVLQADTGSLQGDLEDVLSRLFDFWRHTPAGAAFRSIIAEAQSDPEALERLRAFLIERRAYVREIVERGIARGDLPADAD
GAAIVEMLFGFAWMRLLTGDLGAAEDIPRRVHLILKGAA
>Mature_198_residues
TDAAETAPTRRRTSIGGRRNPESAAAILDAAAAILAENGLGGFSIEAVARRAGAGKPTIYRWWPNKAALLIDVYARQKET
VLQADTGSLQGDLEDVLSRLFDFWRHTPAGAAFRSIIAEAQSDPEALERLRAFLIERRAYVREIVERGIARGDLPADADG
AAIVEMLFGFAWMRLLTGDLGAAEDIPRRVHLILKGAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21595; Mature: 21464

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDAAETAPTRRRTSIGGRRNPESAAAILDAAAAILAENGLGGFSIEAVARRAGAGKPTI
CCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEE
YRWWPNKAALLIDVYARQKETVLQADTGSLQGDLEDVLSRLFDFWRHTPAGAAFRSIIAE
EEECCCCCEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
AQSDPEALERLRAFLIERRAYVREIVERGIARGDLPADADGAAIVEMLFGFAWMRLLTGD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
LGAAEDIPRRVHLILKGAA
CCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TDAAETAPTRRRTSIGGRRNPESAAAILDAAAAILAENGLGGFSIEAVARRAGAGKPTI
CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEE
YRWWPNKAALLIDVYARQKETVLQADTGSLQGDLEDVLSRLFDFWRHTPAGAAFRSIIAE
EEECCCCCEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
AQSDPEALERLRAFLIERRAYVREIVERGIARGDLPADADGAAIVEMLFGFAWMRLLTGD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
LGAAEDIPRRVHLILKGAA
CCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]