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The map label for this gene is yafC [H]

Identifier: 158421907

GI number: 158421907

Start: 328489

End: 329448

Strand: Reverse

Name: yafC [H]

Synonym: AZC_0283

Alternate gene names: 158421907

Gene position: 329448-328489 (Counterclockwise)

Preceding gene: 158421909

Following gene: 158421906

Centisome position: 6.14

GC content: 70.42

Gene sequence:

>960_bases
ATGGCCCGGCTCGACGTCAACCGCACGGCGGAGATGGAGGTGTTCGTGCGCGTGGTGGATGCTGGTGGCTTCTCGGCCGC
CGCCCGCGCCCTGCATCTCACGCCCTCCGCGGTCAGCAAGCTCATCACCCGGCTCGAACTGCGCCTCGGTGCGCGCCTCA
TCAACCGCAACACCCGGCGCCTCCAGCTCACGGCCGAGGGTGCCGCCTTCTATGAGCGCGCCGTCACGCTGCTGGCCGAT
CTCGAGGAGGCCGAGCGCAGTGTCGCCCGCAGCGAGGTGCCGAGCGGACGCCTGCGGGTGAATGCCAACGTGCCCTTCGG
GACCCTCTATCTCCTGCCCGCACTGCCGGAATTCCTCGCGCGCTATCCCGCGGTGACGCTGGATGTGGTGCTCACCGACA
AGGTGGTGGACCTGATGGAGGAGCGCATGGATGTGGCCGTGCGCGCCGGGCCGCTGAAGAGTTCCCAGCTCGTCGCCCGC
AAGCTGGGCGATACCCGCATGGTGATCGTCGCCTCGCCCGAGTATCTCGCGCGCCATGGCACGCCGCGCGGGCCCGCCGA
TCTCGATGCCCATCGCTGCATCGGCTTCTGCTATCTGCGGCAGGTGGAAGGCTGGCCGCTCAAGGCGGAGGAGGGTCGCG
AGGCCACGGTGTTCCGCCCACAGGGCCATGTCCTCGCCAGCGACGGCGAGACGCTTCGCCATATGGTGCTGGCGGGCACG
GGCATCGCCCGCCTCGGCACCTTCCATGTGGCGGCGGACCTCCTGGCCGGGCGCCTCGTGCCGCTGCTGGAGGACTTCAA
CCCCGGCGATACCGACCCCATGCATGCGGTCTATCTCGGCCAGGGCGGCCATATGCCGGCGCGCGTGCGCGCCTATCTCG
ACTTCCTTGTGGAGGTGGTGGCGCCCCGCTTCCGCCGGGCTGCCGCGCTGGAGCCCGCCCGGCTGCTGCAGAACGCCTGA

Upstream 100 bases:

>100_bases
CATCAACGCGACAGCGCATGCGGCGTTGCAGCAAAATGGACGCACGGGCGTGGATGAACTAGAAGCAGTAAATTCAATTC
ATCTGTGATGTGATTTCCAA

Downstream 100 bases:

>100_bases
GCCGCTCCGCGGCCTGACAGAAAGGCGAAACAGGGTTAACGAAACCTTGCAGTCGATGAGAGCTTGTTAACCCTTTTGGC
AAGCCAGACGGCTCAGCGGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MARLDVNRTAEMEVFVRVVDAGGFSAAARALHLTPSAVSKLITRLELRLGARLINRNTRRLQLTAEGAAFYERAVTLLAD
LEEAERSVARSEVPSGRLRVNANVPFGTLYLLPALPEFLARYPAVTLDVVLTDKVVDLMEERMDVAVRAGPLKSSQLVAR
KLGDTRMVIVASPEYLARHGTPRGPADLDAHRCIGFCYLRQVEGWPLKAEEGREATVFRPQGHVLASDGETLRHMVLAGT
GIARLGTFHVAADLLAGRLVPLLEDFNPGDTDPMHAVYLGQGGHMPARVRAYLDFLVEVVAPRFRRAAALEPARLLQNA

Sequences:

>Translated_319_residues
MARLDVNRTAEMEVFVRVVDAGGFSAAARALHLTPSAVSKLITRLELRLGARLINRNTRRLQLTAEGAAFYERAVTLLAD
LEEAERSVARSEVPSGRLRVNANVPFGTLYLLPALPEFLARYPAVTLDVVLTDKVVDLMEERMDVAVRAGPLKSSQLVAR
KLGDTRMVIVASPEYLARHGTPRGPADLDAHRCIGFCYLRQVEGWPLKAEEGREATVFRPQGHVLASDGETLRHMVLAGT
GIARLGTFHVAADLLAGRLVPLLEDFNPGDTDPMHAVYLGQGGHMPARVRAYLDFLVEVVAPRFRRAAALEPARLLQNA
>Mature_318_residues
ARLDVNRTAEMEVFVRVVDAGGFSAAARALHLTPSAVSKLITRLELRLGARLINRNTRRLQLTAEGAAFYERAVTLLADL
EEAERSVARSEVPSGRLRVNANVPFGTLYLLPALPEFLARYPAVTLDVVLTDKVVDLMEERMDVAVRAGPLKSSQLVARK
LGDTRMVIVASPEYLARHGTPRGPADLDAHRCIGFCYLRQVEGWPLKAEEGREATVFRPQGHVLASDGETLRHMVLAGTG
IARLGTFHVAADLLAGRLVPLLEDFNPGDTDPMHAVYLGQGGHMPARVRAYLDFLVEVVAPRFRRAAALEPARLLQNA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=36.8600682593857, Blast_Score=197, Evalue=8e-52,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=31.7725752508361, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI145693193, Length=262, Percent_Identity=32.0610687022901, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=33.5570469798658, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=29.4117647058824, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1789440, Length=270, Percent_Identity=29.2592592592593, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787589, Length=274, Percent_Identity=29.9270072992701, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1788706, Length=171, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789173, Length=262, Percent_Identity=29.3893129770992, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI157672245, Length=173, Percent_Identity=30.0578034682081, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788481, Length=318, Percent_Identity=24.8427672955975, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1790011, Length=316, Percent_Identity=22.1518987341772, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786448, Length=184, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI87082132, Length=259, Percent_Identity=26.6409266409266, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790262, Length=172, Percent_Identity=29.0697674418605, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787806, Length=238, Percent_Identity=25.6302521008403, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34940; Mature: 34809

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLDVNRTAEMEVFVRVVDAGGFSAAARALHLTPSAVSKLITRLELRLGARLINRNTRR
CCCCCCCCCCCCEEEEEEECCCCHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHCCCCEE
LQLTAEGAAFYERAVTLLADLEEAERSVARSEVPSGRLRVNANVPFGTLYLLPALPEFLA
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHH
RYPAVTLDVVLTDKVVDLMEERMDVAVRAGPLKSSQLVARKLGDTRMVIVASPEYLARHG
HCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCHHHHHCC
TPRGPADLDAHRCIGFCYLRQVEGWPLKAEEGREATVFRPQGHVLASDGETLRHMVLAGT
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEECCCHHHHHHHHHCC
GIARLGTFHVAADLLAGRLVPLLEDFNPGDTDPMHAVYLGQGGHMPARVRAYLDFLVEVV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
APRFRRAAALEPARLLQNA
HHHHHHHHCCCHHHHHCCC
>Mature Secondary Structure 
ARLDVNRTAEMEVFVRVVDAGGFSAAARALHLTPSAVSKLITRLELRLGARLINRNTRR
CCCCCCCCCCCEEEEEEECCCCHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHCCCCEE
LQLTAEGAAFYERAVTLLADLEEAERSVARSEVPSGRLRVNANVPFGTLYLLPALPEFLA
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHH
RYPAVTLDVVLTDKVVDLMEERMDVAVRAGPLKSSQLVARKLGDTRMVIVASPEYLARHG
HCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCHHHHHCC
TPRGPADLDAHRCIGFCYLRQVEGWPLKAEEGREATVFRPQGHVLASDGETLRHMVLAGT
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEECCCHHHHHHHHHCC
GIARLGTFHVAADLLAGRLVPLLEDFNPGDTDPMHAVYLGQGGHMPARVRAYLDFLVEVV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
APRFRRAAALEPARLLQNA
HHHHHHHHCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]