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The map label for this gene is ycdK [C]

Identifier: 158421826

GI number: 158421826

Start: 245340

End: 245753

Strand: Direct

Name: ycdK [C]

Synonym: AZC_0202

Alternate gene names: 158421826

Gene position: 245340-245753 (Clockwise)

Preceding gene: 158421825

Following gene: 158421827

Centisome position: 4.57

GC content: 66.43

Gene sequence:

>414_bases
ATGATTCACCGCCGCATCCGCCCCTTCAACACCGCCAAGACCTATCCCGAGCAGCGTCTCGACAACGACCTCGCGCAGGC
CGTGGTCGCGCGCGGCACCACCATCTTCCTGCGTGGCCAGTGCCCGCAGGATCTCGACACCGCCGAGGATGTCGGCATCG
GTGATCCGGTGGCCCAGACCCACAAGGTGATGCAGAACATCCGCCAGTTGGTGGAAGAGTCCGGCGGCACCATGGAGCAC
GTGTGCAAGCTCGTGGTCTATCTGACCGACGTGCGCCACCGCGAGGCGGTCTATCGCACCATGGGCGAGTATATCCGCGG
CGTGCATCCCGTCTGCACCGGCCTCGTCGTGGTGGCGCTGGCCCGCCCCAGCTGGCTGGTGGAGATCGACGCCACCGCCG
TCATTCCCGACTGA

Upstream 100 bases:

>100_bases
CATCGGCTCGCGGCCTGAGGCCGGAGCAGACCCGCTTTCCGCATCGCCGCCGGGCGGCTCCGGCCGGCACCTTTATCGAT
CGAAGACGTGAGGCACGCCC

Downstream 100 bases:

>100_bases
GGCTGGCGTCATGACCTTCTCCATCGCCGCGCGCTGTGCGCGGACGGGGCGCTTCGGCGTTGCCATCTCCTCGTCCTCTC
CGGCGGTCGCCGCCCGCTGC

Product: L-PSP endoribonuclease

Products: NA

Alternate protein names: Endoribonuclease L-PSP Family Protein; Endoribonuclease; Endoribonuclease L-PSP Superfamily Protein; Pyrimidine Utilization Protein C; Ribonuclease PSP-Type; L-PSP Family Endoribonuclease; Protein Dfra

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MIHRRIRPFNTAKTYPEQRLDNDLAQAVVARGTTIFLRGQCPQDLDTAEDVGIGDPVAQTHKVMQNIRQLVEESGGTMEH
VCKLVVYLTDVRHREAVYRTMGEYIRGVHPVCTGLVVVALARPSWLVEIDATAVIPD

Sequences:

>Translated_137_residues
MIHRRIRPFNTAKTYPEQRLDNDLAQAVVARGTTIFLRGQCPQDLDTAEDVGIGDPVAQTHKVMQNIRQLVEESGGTMEH
VCKLVVYLTDVRHREAVYRTMGEYIRGVHPVCTGLVVVALARPSWLVEIDATAVIPD
>Mature_137_residues
MIHRRIRPFNTAKTYPEQRLDNDLAQAVVARGTTIFLRGQCPQDLDTAEDVGIGDPVAQTHKVMQNIRQLVEESGGTMEH
VCKLVVYLTDVRHREAVYRTMGEYIRGVHPVCTGLVVVALARPSWLVEIDATAVIPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15321; Mature: 15321

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHRRIRPFNTAKTYPEQRLDNDLAQAVVARGTTIFLRGQCPQDLDTAEDVGIGDPVAQT
CCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCCCHHHHH
HKVMQNIRQLVEESGGTMEHVCKLVVYLTDVRHREAVYRTMGEYIRGVHPVCTGLVVVAL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ARPSWLVEIDATAVIPD
CCCCEEEEECCEEECCC
>Mature Secondary Structure
MIHRRIRPFNTAKTYPEQRLDNDLAQAVVARGTTIFLRGQCPQDLDTAEDVGIGDPVAQT
CCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCCCHHHHH
HKVMQNIRQLVEESGGTMEHVCKLVVYLTDVRHREAVYRTMGEYIRGVHPVCTGLVVVAL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ARPSWLVEIDATAVIPD
CCCCEEEEECCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA