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The map label for this gene is ytfH [C]

Identifier: 158421804

GI number: 158421804

Start: 213011

End: 213448

Strand: Reverse

Name: ytfH [C]

Synonym: AZC_0180

Alternate gene names: 158421804

Gene position: 213448-213011 (Counterclockwise)

Preceding gene: 158421806

Following gene: 158421792

Centisome position: 3.97

GC content: 60.96

Gene sequence:

>438_bases
ATGCGTGATACCGGGGTGAACTCTCTGAGCCGCGAAGACGTCCTCAAATATTCCCAGACCGTCTGCGATGGCCTTAGGGA
CGATGACGACGGGGTACGTCGAGAGGTGTTGGCGCATGCCGGCAATCGCTGGTCTCTCGGTGTGATTCATACTCTTGGCG
TATATGGCCAGTTGCGCCATGCCGAGATCGCCAGGCGCATGCACGGCGTTACGCAACGGATGCTGACACGTACCCTCCGC
CACTTGGAGCGAGACGGGCTGGTGATCCGCCACGACTTTGAAGAGACCGTTCCGCACGTCGAATATGCGCTGTCCGAGAC
GGGCCTGGAGTTACTCGTCCGAATGGTGCCTCTGTGGACGTGGATCGTCGAGAACGCGGATAGCTTTCGCGCGGCGCGCG
CGGCGTTCGACCGAACGCACGGAACCGACAAGACGTGA

Upstream 100 bases:

>100_bases
GCGACTTCACGGTGGAAACTGCATCGTTCATATTCGGACCCGCTCCGTTCGGTTGCCGCGTCCATCTGGCAACTCATCGG
CGAGTGCGAAAGAAGGGTAC

Downstream 100 bases:

>100_bases
GCACGCAGAAGCAAGGCAGAAGACGTGTCGAAACGCGGTCCGCTTGGGAGCGAGAGCCGGTCGGCACGTGTTGGCTCCCG
TCCTTCTCCCCCGCACCGAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MRDTGVNSLSREDVLKYSQTVCDGLRDDDDGVRREVLAHAGNRWSLGVIHTLGVYGQLRHAEIARRMHGVTQRMLTRTLR
HLERDGLVIRHDFEETVPHVEYALSETGLELLVRMVPLWTWIVENADSFRAARAAFDRTHGTDKT

Sequences:

>Translated_145_residues
MRDTGVNSLSREDVLKYSQTVCDGLRDDDDGVRREVLAHAGNRWSLGVIHTLGVYGQLRHAEIARRMHGVTQRMLTRTLR
HLERDGLVIRHDFEETVPHVEYALSETGLELLVRMVPLWTWIVENADSFRAARAAFDRTHGTDKT
>Mature_145_residues
MRDTGVNSLSREDVLKYSQTVCDGLRDDDDGVRREVLAHAGNRWSLGVIHTLGVYGQLRHAEIARRMHGVTQRMLTRTLR
HLERDGLVIRHDFEETVPHVEYALSETGLELLVRMVPLWTWIVENADSFRAARAAFDRTHGTDKT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=116, Percent_Identity=31.8965517241379, Blast_Score=63, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 16619; Mature: 16619

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDTGVNSLSREDVLKYSQTVCDGLRDDDDGVRREVLAHAGNRWSLGVIHTLGVYGQLRH
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AEIARRMHGVTQRMLTRTLRHLERDGLVIRHDFEETVPHVEYALSETGLELLVRMVPLWT
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WIVENADSFRAARAAFDRTHGTDKT
HHHHCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRDTGVNSLSREDVLKYSQTVCDGLRDDDDGVRREVLAHAGNRWSLGVIHTLGVYGQLRH
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AEIARRMHGVTQRMLTRTLRHLERDGLVIRHDFEETVPHVEYALSETGLELLVRMVPLWT
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WIVENADSFRAARAAFDRTHGTDKT
HHHHCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]