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The map label for this gene is ompR [H]

Identifier: 158421790

GI number: 158421790

Start: 196133

End: 196870

Strand: Reverse

Name: ompR [H]

Synonym: AZC_0166

Alternate gene names: 158421790

Gene position: 196870-196133 (Counterclockwise)

Preceding gene: 158421792

Following gene: 158421789

Centisome position: 3.67

GC content: 68.97

Gene sequence:

>738_bases
ATGTCGCAGGGCGCTTCCGCTACCACCCTTCTCATCGTCGAAGACGACCGGGAGATCCGCTCCCTGCTGGCGGATTTCCT
CGGCCGCGAAGGCTATGACACCCGCCTCGCCGCCGACGGCCGCGCCATGGATGCGATCCTTGCCGGCATCCGTCCCGATC
TCGTCATCCTCGACATCATGTTGCCGGGCGAGGACGGGCTTTCGCTCTGCCGCCGCCTGCGGGCGCAGGGGGATGTGCCG
GTGCTCATGCTCACCGCCAAAGGCGACGAGGTGGACCGGATCGTGGGGCTGGAGGTCGGCGCCGACGACTATCTGGTCAA
GCCCTTCAATCCCAGGGAGTTGCTCGCCCGCATCCGCGCGATATTGCGGCGGGTGCAGGCGGCGGCACGGGTGGGCGAGG
ACCCGCGGCGGCAGGACATCGCCTTCGGCGGGCTGATCGCCGATCTTGATGCCCGCAGCGTCCGGACCCCGGATGGGATC
GCACTCGATCTCACCTCCGCGGAGTTCGACCTCCTCGCCTGCTTCCTCGAGCGGCCGCGCCGCGTGCTGTCGCGCGACCA
GTTGCTCGACTGGACGCGCGGGCGCAGCGCGGACCCGTTCGACCGCACCATCGATGTGGCCGTCAGCCGCCTGCGCCGCC
GCCTGTCCTTGGTCGCGCCGGAGGCCGCACAACTCATCAAGACCGTACGCAACGGCGGCTACATCTTCGCCCTTCCTCCC
GGAGGCAAAGGCAATTGA

Upstream 100 bases:

>100_bases
GCTTCGCAGCAAGATTGCAGGCCAACGCCGTTTCGTAACGATTTGTAACGCGTGCTCCAGCGCCGCTTGCGGGCGGCAGG
CGGCCGAATAGAGTTGCGCC

Downstream 100 bases:

>100_bases
CGCGCTTCAAGCTGCCGCTGCGGCTCGCGCTCATCATCGCGGGCGGCCTCGTCATCGCCCAGATGCTCATGACGGCGGCC
TATTTCACGGATCGGCGTCT

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MSQGASATTLLIVEDDREIRSLLADFLGREGYDTRLAADGRAMDAILAGIRPDLVILDIMLPGEDGLSLCRRLRAQGDVP
VLMLTAKGDEVDRIVGLEVGADDYLVKPFNPRELLARIRAILRRVQAAARVGEDPRRQDIAFGGLIADLDARSVRTPDGI
ALDLTSAEFDLLACFLERPRRVLSRDQLLDWTRGRSADPFDRTIDVAVSRLRRRLSLVAPEAAQLIKTVRNGGYIFALPP
GGKGN

Sequences:

>Translated_245_residues
MSQGASATTLLIVEDDREIRSLLADFLGREGYDTRLAADGRAMDAILAGIRPDLVILDIMLPGEDGLSLCRRLRAQGDVP
VLMLTAKGDEVDRIVGLEVGADDYLVKPFNPRELLARIRAILRRVQAAARVGEDPRRQDIAFGGLIADLDARSVRTPDGI
ALDLTSAEFDLLACFLERPRRVLSRDQLLDWTRGRSADPFDRTIDVAVSRLRRRLSLVAPEAAQLIKTVRNGGYIFALPP
GGKGN
>Mature_244_residues
SQGASATTLLIVEDDREIRSLLADFLGREGYDTRLAADGRAMDAILAGIRPDLVILDIMLPGEDGLSLCRRLRAQGDVPV
LMLTAKGDEVDRIVGLEVGADDYLVKPFNPRELLARIRAILRRVQAAARVGEDPRRQDIAFGGLIADLDARSVRTPDGIA
LDLTSAEFDLLACFLERPRRVLSRDQLLDWTRGRSADPFDRTIDVAVSRLRRRLSLVAPEAAQLIKTVRNGGYIFALPPG
GKGN

Specific function: The N-terminus of this protein is required for the transcriptional expression of both major outer membrane protein genes ompF and ompC; its C-terminal moiety mediates the multimerization of the ompR protein. As a multimer, it turns on the expression of th

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=238, Percent_Identity=48.3193277310924, Blast_Score=199, Evalue=1e-52,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=41.9213973799127, Blast_Score=179, Evalue=1e-46,
Organism=Escherichia coli, GI1788394, Length=228, Percent_Identity=42.1052631578947, Blast_Score=157, Evalue=4e-40,
Organism=Escherichia coli, GI1786599, Length=235, Percent_Identity=39.5744680851064, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI2367329, Length=236, Percent_Identity=40.2542372881356, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1787229, Length=231, Percent_Identity=37.2294372294372, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1790860, Length=227, Percent_Identity=38.7665198237885, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=38.9830508474576, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1786784, Length=233, Percent_Identity=40.7725321888412, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI87082012, Length=229, Percent_Identity=37.5545851528384, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787375, Length=230, Percent_Identity=33.4782608695652, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1786911, Length=211, Percent_Identity=37.914691943128, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1790552, Length=229, Percent_Identity=34.4978165938865, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789402, Length=233, Percent_Identity=33.0472103004292, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1788550, Length=106, Percent_Identity=33.9622641509434, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787487, Length=138, Percent_Identity=36.9565217391304, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1790299, Length=145, Percent_Identity=28.9655172413793, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26868; Mature: 26737

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQGASATTLLIVEDDREIRSLLADFLGREGYDTRLAADGRAMDAILAGIRPDLVILDIM
CCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHCCCCCEEEEEEE
LPGEDGLSLCRRLRAQGDVPVLMLTAKGDEVDRIVGLEVGADDYLVKPFNPRELLARIRA
ECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCCCCEECCCCHHHHHHHHHH
ILRRVQAAARVGEDPRRQDIAFGGLIADLDARSVRTPDGIALDLTSAEFDLLACFLERPR
HHHHHHHHHHCCCCCCHHHHHHCCEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
RVLSRDQLLDWTRGRSADPFDRTIDVAVSRLRRRLSLVAPEAAQLIKTVRNGGYIFALPP
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECC
GGKGN
CCCCC
>Mature Secondary Structure 
SQGASATTLLIVEDDREIRSLLADFLGREGYDTRLAADGRAMDAILAGIRPDLVILDIM
CCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHCCCCCEEEEEEE
LPGEDGLSLCRRLRAQGDVPVLMLTAKGDEVDRIVGLEVGADDYLVKPFNPRELLARIRA
ECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCCCCEECCCCHHHHHHHHHH
ILRRVQAAARVGEDPRRQDIAFGGLIADLDARSVRTPDGIALDLTSAEFDLLACFLERPR
HHHHHHHHHHCCCCCCHHHHHHCCEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
RVLSRDQLLDWTRGRSADPFDRTIDVAVSRLRRRLSLVAPEAAQLIKTVRNGGYIFALPP
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECC
GGKGN
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]