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The map label for this gene is dapB [H]

Identifier: 158421781

GI number: 158421781

Start: 187515

End: 188405

Strand: Reverse

Name: dapB [H]

Synonym: AZC_0157

Alternate gene names: 158421781

Gene position: 188405-187515 (Counterclockwise)

Preceding gene: 158421782

Following gene: 158421780

Centisome position: 3.51

GC content: 71.94

Gene sequence:

>891_bases
GTGCGGGCGGGTCACCTGCCACGGCTGACCCGCCGCCCTTCGGACCGGGCACGTATCCGTTTCAGGGAGCGAAGCGACGT
GTCCGATCTGCGGGTGGTGATCAACGGGGCCGGCGGCCGCATGGGCCAGGAATTGCTGCGCGCGGTCCTGAATGGCGAGG
GACTGTCGCTTGCCGGCGCGCTGGAGCACAGCACCAGCGGCCATCTGGGCGAGGATGCCGGCGTGCTCGCCGGCCTGAAG
CCGGCCGGCGTGACCATCGAGAGCGACGCCGCCGCCACCCTCAACGGCACCGACGTGGTGATCGACTTCTCCACCCCGGC
ATCGTCCGTGCGTCTCGCGGAGCGCCTCGCCGAGGCCGGCATCGCCATCGTCATCGGCACCACCGGCTTCTCGGCGGCGG
AGAATGCAGCCATCGAGGCGGCCGCCCGCCGCACCGTCGTGGTGAAGTCCGGCAACATGAGCCTCGGCGTGAACATGCTG
GCGGCCCTCACCCGCCAGGCCGCCGCCGCCCTCGGCATCGAATTCGACATCGAGATCGTCGAGATGCACCACGCCCGCAA
GGTCGACGCGCCCTCGGGCACGGCCCTGCTGCTGGGCGAGGCTGCGGCCGAGGGTCGCGGTATCCACCTGCCGGACTGGA
CCGCCAAGGCCCGCGATGGCGTCACCGGCCCCCGCCGCCCCGGCGACATCGGCTTTGCCAGCCTGCGCGGCGGCTCCGTG
GTGGGCGAGCATGCGGTGATCTTCGCTGGCCCCTCCGAACGCGTCGAACTGGTGCACAAGGCCGAGAGCCGCACCATCTT
CGCCAATGGCGCCCTCACGGCCGCCCGCTGGGCCAAGGGCCGCGAGCCCGGCCTCTATTCCATGGTCGATGTGCTGGGCC
TCGCCGGCTGA

Upstream 100 bases:

>100_bases
CTCGCCCGCCTACCAGCAGGCGATCCCGCTGCGGCAGGCCGTGGCGGAAACGGACTTCATCATCATTTCGGGCTATGACG
GTCCCCAGCCCGGCTGAGTC

Downstream 100 bases:

>100_bases
CCCGCGCGCGGGGTGGAAGGTGGGCCGTCTTTGAGTTTTCCGGCGGCGTCCTATATGTCTCGCGTGCATTCCGATCGCGG
CCCGGCGGCCTCAGCCGCCG

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MRAGHLPRLTRRPSDRARIRFRERSDVSDLRVVINGAGGRMGQELLRAVLNGEGLSLAGALEHSTSGHLGEDAGVLAGLK
PAGVTIESDAAATLNGTDVVIDFSTPASSVRLAERLAEAGIAIVIGTTGFSAAENAAIEAAARRTVVVKSGNMSLGVNML
AALTRQAAAALGIEFDIEIVEMHHARKVDAPSGTALLLGEAAAEGRGIHLPDWTAKARDGVTGPRRPGDIGFASLRGGSV
VGEHAVIFAGPSERVELVHKAESRTIFANGALTAARWAKGREPGLYSMVDVLGLAG

Sequences:

>Translated_296_residues
MRAGHLPRLTRRPSDRARIRFRERSDVSDLRVVINGAGGRMGQELLRAVLNGEGLSLAGALEHSTSGHLGEDAGVLAGLK
PAGVTIESDAAATLNGTDVVIDFSTPASSVRLAERLAEAGIAIVIGTTGFSAAENAAIEAAARRTVVVKSGNMSLGVNML
AALTRQAAAALGIEFDIEIVEMHHARKVDAPSGTALLLGEAAAEGRGIHLPDWTAKARDGVTGPRRPGDIGFASLRGGSV
VGEHAVIFAGPSERVELVHKAESRTIFANGALTAARWAKGREPGLYSMVDVLGLAG
>Mature_296_residues
MRAGHLPRLTRRPSDRARIRFRERSDVSDLRVVINGAGGRMGQELLRAVLNGEGLSLAGALEHSTSGHLGEDAGVLAGLK
PAGVTIESDAAATLNGTDVVIDFSTPASSVRLAERLAEAGIAIVIGTTGFSAAENAAIEAAARRTVVVKSGNMSLGVNML
AALTRQAAAALGIEFDIEIVEMHHARKVDAPSGTALLLGEAAAEGRGIHLPDWTAKARDGVTGPRRPGDIGFASLRGGSV
VGEHAVIFAGPSERVELVHKAESRTIFANGALTAARWAKGREPGLYSMVDVLGLAG

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=267, Percent_Identity=47.940074906367, Blast_Score=223, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 30611; Mature: 30611

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAGHLPRLTRRPSDRARIRFRERSDVSDLRVVINGAGGRMGQELLRAVLNGEGLSLAGA
CCCCCCCHHHCCCCCHHEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEE
LEHSTSGHLGEDAGVLAGLKPAGVTIESDAAATLNGTDVVIDFSTPASSVRLAERLAEAG
CCCCCCCCCCCCCCEEECCCCCCEEEECCCCEEECCCEEEEECCCCHHHHHHHHHHHHCC
IAIVIGTTGFSAAENAAIEAAARRTVVVKSGNMSLGVNMLAALTRQAAAALGIEFDIEIV
EEEEEECCCCCCHHHHHHHHHHCEEEEEECCCCEEHHHHHHHHHHHHHHHHCCEEEEEEE
EMHHARKVDAPSGTALLLGEAAAEGRGIHLPDWTAKARDGVTGPRRPGDIGFASLRGGSV
EEHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEEEECCCCE
VGEHAVIFAGPSERVELVHKAESRTIFANGALTAARWAKGREPGLYSMVDVLGLAG
ECCCEEEEECCHHHHHHHHHCCCCEEEECCCEEHHHHHCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MRAGHLPRLTRRPSDRARIRFRERSDVSDLRVVINGAGGRMGQELLRAVLNGEGLSLAGA
CCCCCCCHHHCCCCCHHEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEE
LEHSTSGHLGEDAGVLAGLKPAGVTIESDAAATLNGTDVVIDFSTPASSVRLAERLAEAG
CCCCCCCCCCCCCCEEECCCCCCEEEECCCCEEECCCEEEEECCCCHHHHHHHHHHHHCC
IAIVIGTTGFSAAENAAIEAAARRTVVVKSGNMSLGVNMLAALTRQAAAALGIEFDIEIV
EEEEEECCCCCCHHHHHHHHHHCEEEEEECCCCEEHHHHHHHHHHHHHHHHCCEEEEEEE
EMHHARKVDAPSGTALLLGEAAAEGRGIHLPDWTAKARDGVTGPRRPGDIGFASLRGGSV
EEHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCEEEECCCCE
VGEHAVIFAGPSERVELVHKAESRTIFANGALTAARWAKGREPGLYSMVDVLGLAG
ECCCEEEEECCHHHHHHHHHCCCCEEEECCCEEHHHHHCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA