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The map label for this gene is ctc

Identifier: 15836482

GI number: 15836482

Start: 1085278

End: 1085835

Strand: Direct

Name: ctc

Synonym: CPj0949

Alternate gene names: 15836482

Gene position: 1085278-1085835 (Clockwise)

Preceding gene: 15836480

Following gene: 15836483

Centisome position: 88.48

GC content: 38.71

Gene sequence:

>558_bases
ATGGAGCTTGTAGTTACAAGTCGAGAGACTGGTAAGAAATCTTTTCTTAAGAAAATTCGTCAGCAAGGTGGAATCCCTGC
TGTAGTATATTCTGCAGGCAAGAGCCTTGCGAATATCACTGTGGATGCACTTGTGTTTAAAAAGTTTTTATCGAATTTAG
AAAGCGGAGCCCTATCTTCTACGGTCTTTTCTTTGTCTTATGAAGGGCGTATAATTAAAGCTCTAGTTAAAGATATCCAA
TATCAAATCACCACCTACGATGTAATTCACCTCGATTTTGAAGAACTCGTAGAAGATCGTCCTGTAAAGTTAAATATTCC
TATCCGTTGTATCAATGCTGTAGACTGTATTGGAGTGAAACTCGGTGGATCTTTACGACAAGTGATTCGTGCCGTTCGCG
TAGTATGCAAACCTAAAGATATTGTACCTTTTCTAGAACTTGATGTGCGGTCTGTTGGACTTTCTCAAACGAGAAAACTA
TCCGATATAAAGATCCCTGCTGGAATAGAAACAATTACACCTTTGAAAGAAGTCGCTATAACCGTCTCTAGAAGATAA

Upstream 100 bases:

>100_bases
CATGACAGTGATTGGCCCTCTAAGAAAATATGTTTGGACTCTCAGAGTGAATGCATAGCGCACAGCTCTTTTAGCTCAAG
ATTACGGAGAAAACAACATT

Downstream 100 bases:

>100_bases
TATGGCTAAGCTCATTGTAGCGATAGGGAACCCTAGGCATGGGTATGCAAATACTAGACATAACGCAGGGTTCCTATTGG
CTGATAGGTTAGTGGAGGAG

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MELVVTSRETGKKSFLKKIRQQGGIPAVVYSAGKSLANITVDALVFKKFLSNLESGALSSTVFSLSYEGRIIKALVKDIQ
YQITTYDVIHLDFEELVEDRPVKLNIPIRCINAVDCIGVKLGGSLRQVIRAVRVVCKPKDIVPFLELDVRSVGLSQTRKL
SDIKIPAGIETITPLKEVAITVSRR

Sequences:

>Translated_185_residues
MELVVTSRETGKKSFLKKIRQQGGIPAVVYSAGKSLANITVDALVFKKFLSNLESGALSSTVFSLSYEGRIIKALVKDIQ
YQITTYDVIHLDFEELVEDRPVKLNIPIRCINAVDCIGVKLGGSLRQVIRAVRVVCKPKDIVPFLELDVRSVGLSQTRKL
SDIKIPAGIETITPLKEVAITVSRR
>Mature_185_residues
MELVVTSRETGKKSFLKKIRQQGGIPAVVYSAGKSLANITVDALVFKKFLSNLESGALSSTVFSLSYEGRIIKALVKDIQ
YQITTYDVIHLDFEELVEDRPVKLNIPIRCINAVDCIGVKLGGSLRQVIRAVRVVCKPKDIVPFLELDVRSVGLSQTRKL
SDIKIPAGIETITPLKEVAITVSRR

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_CHLPN (Q9Z6V7)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   C86609
- PIR:   D72014
- PIR:   H81523
- RefSeq:   NP_225144.1
- RefSeq:   NP_301006.1
- RefSeq:   NP_445447.1
- RefSeq:   NP_877258.1
- ProteinModelPortal:   Q9Z6V7
- SMR:   Q9Z6V7
- GeneID:   1467665
- GeneID:   895638
- GeneID:   919714
- GeneID:   963367
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0910
- KEGG:   cpn:CPn0949
- KEGG:   cpt:CpB0986
- TIGR:   CP_0910
- HOGENOM:   HBG731986
- OMA:   IRCINAV
- ProtClustDB:   PRK05618
- BioCyc:   CPNE115711:CP_0910-MONOMER
- BioCyc:   CPNE115713:CPN0949-MONOMER
- BioCyc:   CPNE138677:CPJ0949-MONOMER
- BioCyc:   CPNE182082:CPB0986-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 20425; Mature: 20425

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELVVTSRETGKKSFLKKIRQQGGIPAVVYSAGKSLANITVDALVFKKFLSNLESGALSS
CEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
TVFSLSYEGRIIKALVKDIQYQITTYDVIHLDFEELVEDRPVKLNIPIRCINAVDCIGVK
HEEEEECCCHHHHHHHHHHHEEEEEEEEEEECHHHHHCCCCEEEECCEEEECHHHHEEEE
LGGSLRQVIRAVRVVCKPKDIVPFLELDVRSVGLSQTRKLSDIKIPAGIETITPLKEVAI
ECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHCCCCEECCCCCCHHCCHHHHHE
TVSRR
EECCC
>Mature Secondary Structure
MELVVTSRETGKKSFLKKIRQQGGIPAVVYSAGKSLANITVDALVFKKFLSNLESGALSS
CEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
TVFSLSYEGRIIKALVKDIQYQITTYDVIHLDFEELVEDRPVKLNIPIRCINAVDCIGVK
HEEEEECCCHHHHHHHHHHHEEEEEEEEEEECHHHHHCCCCEEEECCEEEECHHHHEEEE
LGGSLRQVIRAVRVVCKPKDIVPFLELDVRSVGLSQTRKLSDIKIPAGIETITPLKEVAI
ECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHCCCCEECCCCCCHHCCHHHHHE
TVSRR
EECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362