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The map label for this gene is psdD

Identifier: 15836372

GI number: 15836372

Start: 948578

End: 949483

Strand: Direct

Name: psdD

Synonym: CPj0839

Alternate gene names: 15836372

Gene position: 948578-949483 (Clockwise)

Preceding gene: 15836367

Following gene: 15836373

Centisome position: 77.34

GC content: 39.96

Gene sequence:

>906_bases
GTGCAGAAGCCCCAATATATTGATCGAATCACTAAAAAAAAAGTAATAGAACCTATATTTTATGAAAAAACAATGCTCTT
CCTATACAACTCTAAGCTAGGGAAGAAGCTCTCAGTATTTCTATCAACACACCCCATCTTTTCTCGAATTTATGGCTGGC
TTCAAAGGTGTTCGTGGACACGTCGGCAAATTCGCCCTTTCATGAATCGATATAAGATTTCTGAAAAAGAATTGACAAAG
CCTGTTGCAGACTTCACCTCATTTAATGATTTTTTTACCCGGAAATTGAAACCCGAAGCACGCCCTATTGTTGGTGGGAA
AGAGGTATTCATCACTCCTGTGGATGGACGTTACCTTGTGTATCCTAATGTTTCGGAATTCGATAAGTTTATTGTTAAAT
CAAAAGCGTTTTCATTACCCAAGCTTTTAGGAGACCATGAGTTAACAAAATTATACGCTCATGGCAGCATTGTTTTTGCC
CGCCTTGCCCCCTTTGATTACCATCGATTCCATTTTCCCTGTGATTGCCTTCCTCAAAAGACACGTTGTGTGAATGGAGC
GCTGTTCTCTGTCCATCCTTTAGCTGTTAAAGATAATTTCATTTTATTTTGTGAAAATAAACGGACGGTTACTGTACTCG
AAACAGAGCAGTTCGGCAACGTCCTCTATTTAGAAGTTGGAGCTATGAATGTAGGCTCCATTGTACAAACATTTTCTCCG
AACCAAACCTATGCTAAAGGTGACGAGAAGGGCTTTTTTGCTTTTGGCGGCTCTACAGTTATCTTGCTCTTTTTGCCTAA
CGCTATACGGTTCGATAACGATCTTTTGAAGAACTCACGTATGGGTTTTGAAACACGCTGCTTGATGGGGCAGTCATTAG
GTAGATCTCAGAGAGAAGAAATTTAA

Upstream 100 bases:

>100_bases
TAAAGAGGTGAAAGGAGTTTGGATAAATATTAAGACTAATTCAATTGGAATATTTTCATTAATCTTTTTATAATTTCTTT
TTATCGTTTCTAGAGGTCTT

Downstream 100 bases:

>100_bases
AGACTTTAAAGACTTTTTTTGGTATTGCAAAGAGAGATAAAAGTCAAAAATGGCGAATTATGTGGTTAGTCATCTTGTGG
GCTCTAGCTGCAAGTTTAGC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MQKPQYIDRITKKKVIEPIFYEKTMLFLYNSKLGKKLSVFLSTHPIFSRIYGWLQRCSWTRRQIRPFMNRYKISEKELTK
PVADFTSFNDFFTRKLKPEARPIVGGKEVFITPVDGRYLVYPNVSEFDKFIVKSKAFSLPKLLGDHELTKLYAHGSIVFA
RLAPFDYHRFHFPCDCLPQKTRCVNGALFSVHPLAVKDNFILFCENKRTVTVLETEQFGNVLYLEVGAMNVGSIVQTFSP
NQTYAKGDEKGFFAFGGSTVILLFLPNAIRFDNDLLKNSRMGFETRCLMGQSLGRSQREEI

Sequences:

>Translated_301_residues
MQKPQYIDRITKKKVIEPIFYEKTMLFLYNSKLGKKLSVFLSTHPIFSRIYGWLQRCSWTRRQIRPFMNRYKISEKELTK
PVADFTSFNDFFTRKLKPEARPIVGGKEVFITPVDGRYLVYPNVSEFDKFIVKSKAFSLPKLLGDHELTKLYAHGSIVFA
RLAPFDYHRFHFPCDCLPQKTRCVNGALFSVHPLAVKDNFILFCENKRTVTVLETEQFGNVLYLEVGAMNVGSIVQTFSP
NQTYAKGDEKGFFAFGGSTVILLFLPNAIRFDNDLLKNSRMGFETRCLMGQSLGRSQREEI
>Mature_301_residues
MQKPQYIDRITKKKVIEPIFYEKTMLFLYNSKLGKKLSVFLSTHPIFSRIYGWLQRCSWTRRQIRPFMNRYKISEKELTK
PVADFTSFNDFFTRKLKPEARPIVGGKEVFITPVDGRYLVYPNVSEFDKFIVKSKAFSLPKLLGDHELTKLYAHGSIVFA
RLAPFDYHRFHFPCDCLPQKTRCVNGALFSVHPLAVKDNFILFCENKRTVTVLETEQFGNVLYLEVGAMNVGSIVQTFSP
NQTYAKGDEKGFFAFGGSTVILLFLPNAIRFDNDLLKNSRMGFETRCLMGQSLGRSQREEI

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily

Homologues:

Organism=Escherichia coli, GI1790604, Length=251, Percent_Identity=33.4661354581673, Blast_Score=117, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI71980843, Length=212, Percent_Identity=30.188679245283, Blast_Score=81, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71980840, Length=255, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321609, Length=276, Percent_Identity=37.3188405797101, Blast_Score=171, Evalue=1e-43,
Organism=Drosophila melanogaster, GI24649526, Length=303, Percent_Identity=26.7326732673267, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24649528, Length=303, Percent_Identity=26.7326732673267, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24649524, Length=303, Percent_Identity=26.7326732673267, Blast_Score=83, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_CHLPN (Q9Z767)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   E86595
- PIR:   F72029
- RefSeq:   NP_225034.1
- RefSeq:   NP_300896.1
- RefSeq:   NP_445567.1
- RefSeq:   NP_877140.1
- GeneID:   1467547
- GeneID:   894675
- GeneID:   919601
- GeneID:   963507
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP1030
- KEGG:   cpn:CPn0839
- KEGG:   cpt:CpB0868
- TIGR:   CP_1030
- HOGENOM:   HBG302256
- OMA:   NKREWSI
- PhylomeDB:   Q9Z767
- ProtClustDB:   PRK00723
- BioCyc:   CPNE115711:CP_1030-MONOMER
- BioCyc:   CPNE115713:CPN0839-MONOMER
- BioCyc:   CPNE138677:CPJ0839-MONOMER
- BioCyc:   CPNE182082:CPB0868-MONOMER
- BRENDA:   4.1.1.65
- HAMAP:   MF_00663
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 34827; Mature: 34827

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKPQYIDRITKKKVIEPIFYEKTMLFLYNSKLGKKLSVFLSTHPIFSRIYGWLQRCSWT
CCCCHHHHHHHHHHHHCHHHHHHEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
RRQIRPFMNRYKISEKELTKPVADFTSFNDFFTRKLKPEARPIVGGKEVFITPVDGRYLV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEE
YPNVSEFDKFIVKSKAFSLPKLLGDHELTKLYAHGSIVFARLAPFDYHRFHFPCDCLPQK
CCCHHHHHHHHHHHHHHCCHHHHCCHHHHHHEECCCEEEEEECCCCCCEECCCCCCCCCH
TRCVNGALFSVHPLAVKDNFILFCENKRTVTVLETEQFGNVLYLEVGAMNVGSIVQTFSP
HHHHCCCEEEEEEEEEECCEEEEECCCCEEEEEEHHCCCCEEEEEECCCCHHHHHHHCCC
NQTYAKGDEKGFFAFGGSTVILLFLPNAIRFDNDLLKNSRMGFETRCLMGQSLGRSQREE
CCCCCCCCCCCEEEECCCEEEEEECCCCHHCCHHHHHCCCCCCHHHHHHHHHCCCHHHHC
I
C
>Mature Secondary Structure
MQKPQYIDRITKKKVIEPIFYEKTMLFLYNSKLGKKLSVFLSTHPIFSRIYGWLQRCSWT
CCCCHHHHHHHHHHHHCHHHHHHEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
RRQIRPFMNRYKISEKELTKPVADFTSFNDFFTRKLKPEARPIVGGKEVFITPVDGRYLV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEE
YPNVSEFDKFIVKSKAFSLPKLLGDHELTKLYAHGSIVFARLAPFDYHRFHFPCDCLPQK
CCCHHHHHHHHHHHHHHCCHHHHCCHHHHHHEECCCEEEEEECCCCCCEECCCCCCCCCH
TRCVNGALFSVHPLAVKDNFILFCENKRTVTVLETEQFGNVLYLEVGAMNVGSIVQTFSP
HHHHCCCEEEEEEEEEECCEEEEECCCCEEEEEEHHCCCCEEEEEECCCCHHHHHHHCCC
NQTYAKGDEKGFFAFGGSTVILLFLPNAIRFDNDLLKNSRMGFETRCLMGQSLGRSQREE
CCCCCCCCCCCEEEECCCEEEEEECCCCHHCCHHHHHCCCCCCHHHHHHHHHCCCHHHHC
I
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362