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The map label for this gene is pmp_19

Identifier: 15836070

GI number: 15836070

Start: 618025

End: 620868

Strand: Direct

Name: pmp_19

Synonym: CPj0539

Alternate gene names: 15836070

Gene position: 618025-620868 (Clockwise)

Preceding gene: 15836069

Following gene: 15836071

Centisome position: 50.39

GC content: 42.41

Gene sequence:

>2844_bases
ATGAAGCAGATGCGTCTTTGGGGATTTTTATTTCTCTCTTCCTTCTGTCAAGTTTCTTATCTACGAGCAAACGATGTTCT
CCTCCCTCTATCAGGGATTCATTCTGGAGAAGACCTTGAACTCTTTACTCTACGCAGTTCCTCCCCAACAAAAACTACGT
ATTCTCTACGCAAAGATTTTATTGTTTGTGATTTTGCAGGAAATTCTATTCACAAGCCTGGAGCTGCATTCCTGAACTTA
AAAGGCGATCTATTTTTTATAAATAGCACTCCCCTAGCGGCTCTTACCTTTAAAAACATTCACTTAGGAGCTCGCGGTGC
TGGGCTCTTCTCGGAATCCAATGTGACCTTCAAAGGCCTGCACTCTCTCGTTCTCGAAAACAACGAAAGTTGGGGAGGCG
TCCTCACCACATCTGGCGACCTTTCCTTCATAAATAATACCAGTGTGCTTTGTCAAAACAACATTAGCTATGGACCTGGA
GGAGCGCTACTCTTACAAGGAAGAAAAAGCAAGGCTCTCTTTTTCAGAGACAATCGAGGAACAATTCTATTTCTGAAAAA
CAAAGCCGTGAATCAAGATGAATCCCATCCTGGGTACGGAGGAGCTGTAAGTAGTATAAGTCCTGGCTCCCCGATTACCT
TCGCTGACAACCAAGAAATCCTATTCCAAGAGAATGAGGGCGAACTTGGTGGAGCCATTTATAACGATCAGGGTGCCATA
ACTTTTGAGAATAACTTTCAAACCACAAGCTTTTTCTCTAACAAAGCTAGTTTCGGAGGAGCTGTCTATAGCCGCTACTG
CAATCTCTATTCACAGTGGGGCGATACCCTATTCACTAAAAACGCTGCTGCAAAAGTAGGCGGAGCCATCCATGCGGATT
ATGTTCATATAAGAGACTGTAAAGGAAGCATCGTCTTTGAGGAGAACTCAGCAACAGCTGGAGGGGCAATCGCAGTAAAT
GCAGTTTGTGACATTAATGCTCAAGGTCCTGTTCGCTTTATAAATAACTCTGCGTTAGGACTAAATGGTGGTGCTATTTA
TATGCAGGCTACTGGATCTATATTGCGCTTACATGCAAATCAAGGAGATATTGAATTTTGTGGAAATAAAGTACGATCGC
AGTTTCATTCACATATAAATTCCACTTCAAACTTCACAAATAATGCCATTACTATCCAAGGAGCGCCTCGAGAATTTTCG
CTCAGCGCGAATGAAGGACATCGCATCTGTTTCTATGATCCTATAATTTCTGCAACAGAAAACTATAACTCTCTGTACAT
CAACCATCAGAGACTTTTAGAAGCCGGGGGTGCTGTGATCTTTTCAGGAGCACGCCTATCTCCAGAGCATAAAAAAGATA
ATAAGAACAAAACTTCGATTATAAACCAGCCCGTACGTCTCTGTTCTGGAGTCCTTTCTATAGAAGGGGGCGCGATTCTT
GCTGTTCGTTCTTTTTATCAAGAAGGAGGTCTTCTTGCTCTCGGGCCAGGTTCTAAACTGACCACTCAAGGGAAAAATTC
TGAAAAAGATAAAATTGTCATCACAAATTTAGGATTCAACCTAGAAAATCTAGACTCTTCGGATCCTGCAGAAATCCGAG
CTACAGAAAAAGCCTCTATTGAAATTTCTGGAGTTCCTAGAGTCTATGGTCACACAGAATCTTTCTATGAAAATCATGAG
TATGCCTCCAAACCTTATACAACTTCGATTATTCTATCTGCCAAAAAACTTGTTACAGCTCCCTCTAGGCCAGAGAAAGA
CATCCAAAATCTCATCATCGCTGAATCTGAGTATATGGGCTACGGCTATCAAGGCTCATGGGAATTCTCCTGGTCTCCTA
ACGACACTAAAGAAAAGAAAACCATTATAGCCTCTTGGACTCCTACAGGAGAATTTTCTTTAGATCCGAAGCGCCGTGGA
TCTTTCATTCCCACAACCTTATGGTCGACATTCTCTGGGCTGAATATAGCATCGAATATCGTGAATAACAATTACCTCAA
CAACTCCGAGGTCATCCCCCTGCAACATCTCTGTGTTTTTGGAGGCCCTGTCTATCAGATTATGGAGCAAAATCCTAAAC
AGAGCTCTAACAATCTCTTAGTTCAACATGCGGGTCATAATGTTGGAGCTAGAATTCCTTTCTCTTTCAATACCATATTG
AGTGCTGCACTTACTCAACTCTTCTCTTCTTCATCACAACAAAATGTTGCTGATAAGAGCCACGCGCAAATATTGATAGG
GACTGTATCTCTTAATAAAAGTTGGCAAGCACTATCTCTTAGATCTTCATTTAGCTATACGGAAGACTCTCAGGTAATGA
AGCACGTATTCCCCTATAAAGGGACCTCTCGAGGATCTTGGAGAAACTACGGATGGTCCGGATCTGTCGGCATGTCTTAC
GCCTATCCTAAAGGAATCCGCTATCTAAAGATGACTCCCTTTGTTGACCTTCAGTATACAAAGTTAGTACAAAATCCCTT
TGTGGAAACGGGTTATGACCCTAGATATTTTTCTTCCTCGGAGATGACGAACCTATCTCTACCGATAGGTATCGCTTTAG
AAATGCGCTTTATAGGCTCGCGTTCTTCCCTATTTCTCCAAGTCAGCACCTCGTACATTAAAGACTTACGTCGGGTCAAC
CCACAATCTTCAGCTTCCTTGGTGTTAAATCACTACACGTGGGATATCCAAGGAGTCCCTCTAGGGAAAGAAGCTCTAAA
CATTACCTTAAATAGCACGATTAAGTACAAGATTGTGACTGCCTATATGGGGATTTCTAGCACCCAACGAGAAGGCAGTA
ACCTTTCGGCAAATGCTCATGCAGGCCTCTCCCTTAGTTTCTAG

Upstream 100 bases:

>100_bases
ATGCCATTCTCGAGTCAACTTTTTATTTCCGTGTATTTATTTTTCTGTTCTATGTAAGTTTAGATCTGTATAAGGCTATA
ACTTATTAGGACTCCGACAT

Downstream 100 bases:

>100_bases
AAGTTAGCACTATAGAAATAAAAGAAGACTTAAAAAGCGCGTGGTTATCATTCAAACACGCGCTTTTTTATCCCTTGCCT
AATTTATCCATCTGATTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: Polymorphic membrane protein 19 [H]

Number of amino acids: Translated: 947; Mature: 947

Protein sequence:

>947_residues
MKQMRLWGFLFLSSFCQVSYLRANDVLLPLSGIHSGEDLELFTLRSSSPTKTTYSLRKDFIVCDFAGNSIHKPGAAFLNL
KGDLFFINSTPLAALTFKNIHLGARGAGLFSESNVTFKGLHSLVLENNESWGGVLTTSGDLSFINNTSVLCQNNISYGPG
GALLLQGRKSKALFFRDNRGTILFLKNKAVNQDESHPGYGGAVSSISPGSPITFADNQEILFQENEGELGGAIYNDQGAI
TFENNFQTTSFFSNKASFGGAVYSRYCNLYSQWGDTLFTKNAAAKVGGAIHADYVHIRDCKGSIVFEENSATAGGAIAVN
AVCDINAQGPVRFINNSALGLNGGAIYMQATGSILRLHANQGDIEFCGNKVRSQFHSHINSTSNFTNNAITIQGAPREFS
LSANEGHRICFYDPIISATENYNSLYINHQRLLEAGGAVIFSGARLSPEHKKDNKNKTSIINQPVRLCSGVLSIEGGAIL
AVRSFYQEGGLLALGPGSKLTTQGKNSEKDKIVITNLGFNLENLDSSDPAEIRATEKASIEISGVPRVYGHTESFYENHE
YASKPYTTSIILSAKKLVTAPSRPEKDIQNLIIAESEYMGYGYQGSWEFSWSPNDTKEKKTIIASWTPTGEFSLDPKRRG
SFIPTTLWSTFSGLNIASNIVNNNYLNNSEVIPLQHLCVFGGPVYQIMEQNPKQSSNNLLVQHAGHNVGARIPFSFNTIL
SAALTQLFSSSSQQNVADKSHAQILIGTVSLNKSWQALSLRSSFSYTEDSQVMKHVFPYKGTSRGSWRNYGWSGSVGMSY
AYPKGIRYLKMTPFVDLQYTKLVQNPFVETGYDPRYFSSSEMTNLSLPIGIALEMRFIGSRSSLFLQVSTSYIKDLRRVN
PQSSASLVLNHYTWDIQGVPLGKEALNITLNSTIKYKIVTAYMGISSTQREGSNLSANAHAGLSLSF

Sequences:

>Translated_947_residues
MKQMRLWGFLFLSSFCQVSYLRANDVLLPLSGIHSGEDLELFTLRSSSPTKTTYSLRKDFIVCDFAGNSIHKPGAAFLNL
KGDLFFINSTPLAALTFKNIHLGARGAGLFSESNVTFKGLHSLVLENNESWGGVLTTSGDLSFINNTSVLCQNNISYGPG
GALLLQGRKSKALFFRDNRGTILFLKNKAVNQDESHPGYGGAVSSISPGSPITFADNQEILFQENEGELGGAIYNDQGAI
TFENNFQTTSFFSNKASFGGAVYSRYCNLYSQWGDTLFTKNAAAKVGGAIHADYVHIRDCKGSIVFEENSATAGGAIAVN
AVCDINAQGPVRFINNSALGLNGGAIYMQATGSILRLHANQGDIEFCGNKVRSQFHSHINSTSNFTNNAITIQGAPREFS
LSANEGHRICFYDPIISATENYNSLYINHQRLLEAGGAVIFSGARLSPEHKKDNKNKTSIINQPVRLCSGVLSIEGGAIL
AVRSFYQEGGLLALGPGSKLTTQGKNSEKDKIVITNLGFNLENLDSSDPAEIRATEKASIEISGVPRVYGHTESFYENHE
YASKPYTTSIILSAKKLVTAPSRPEKDIQNLIIAESEYMGYGYQGSWEFSWSPNDTKEKKTIIASWTPTGEFSLDPKRRG
SFIPTTLWSTFSGLNIASNIVNNNYLNNSEVIPLQHLCVFGGPVYQIMEQNPKQSSNNLLVQHAGHNVGARIPFSFNTIL
SAALTQLFSSSSQQNVADKSHAQILIGTVSLNKSWQALSLRSSFSYTEDSQVMKHVFPYKGTSRGSWRNYGWSGSVGMSY
AYPKGIRYLKMTPFVDLQYTKLVQNPFVETGYDPRYFSSSEMTNLSLPIGIALEMRFIGSRSSLFLQVSTSYIKDLRRVN
PQSSASLVLNHYTWDIQGVPLGKEALNITLNSTIKYKIVTAYMGISSTQREGSNLSANAHAGLSLSF
>Mature_947_residues
MKQMRLWGFLFLSSFCQVSYLRANDVLLPLSGIHSGEDLELFTLRSSSPTKTTYSLRKDFIVCDFAGNSIHKPGAAFLNL
KGDLFFINSTPLAALTFKNIHLGARGAGLFSESNVTFKGLHSLVLENNESWGGVLTTSGDLSFINNTSVLCQNNISYGPG
GALLLQGRKSKALFFRDNRGTILFLKNKAVNQDESHPGYGGAVSSISPGSPITFADNQEILFQENEGELGGAIYNDQGAI
TFENNFQTTSFFSNKASFGGAVYSRYCNLYSQWGDTLFTKNAAAKVGGAIHADYVHIRDCKGSIVFEENSATAGGAIAVN
AVCDINAQGPVRFINNSALGLNGGAIYMQATGSILRLHANQGDIEFCGNKVRSQFHSHINSTSNFTNNAITIQGAPREFS
LSANEGHRICFYDPIISATENYNSLYINHQRLLEAGGAVIFSGARLSPEHKKDNKNKTSIINQPVRLCSGVLSIEGGAIL
AVRSFYQEGGLLALGPGSKLTTQGKNSEKDKIVITNLGFNLENLDSSDPAEIRATEKASIEISGVPRVYGHTESFYENHE
YASKPYTTSIILSAKKLVTAPSRPEKDIQNLIIAESEYMGYGYQGSWEFSWSPNDTKEKKTIIASWTPTGEFSLDPKRRG
SFIPTTLWSTFSGLNIASNIVNNNYLNNSEVIPLQHLCVFGGPVYQIMEQNPKQSSNNLLVQHAGHNVGARIPFSFNTIL
SAALTQLFSSSSQQNVADKSHAQILIGTVSLNKSWQALSLRSSFSYTEDSQVMKHVFPYKGTSRGSWRNYGWSGSVGMSY
AYPKGIRYLKMTPFVDLQYTKLVQNPFVETGYDPRYFSSSEMTNLSLPIGIALEMRFIGSRSSLFLQVSTSYIKDLRRVN
PQSSASLVLNHYTWDIQGVPLGKEALNITLNSTIKYKIVTAYMGISSTQREGSNLSANAHAGLSLSF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR003368
- InterPro:   IPR011427 [H]

Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]

EC number: NA

Molecular weight: Translated: 103630; Mature: 103630

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQMRLWGFLFLSSFCQVSYLRANDVLLPLSGIHSGEDLELFTLRSSSPTKTTYSLRKDF
CCCHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCE
IVCDFAGNSIHKPGAAFLNLKGDLFFINSTPLAALTFKNIHLGARGAGLFSESNVTFKGL
EEEEECCCCCCCCCCEEEEECCCEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCHHHH
HSLVLENNESWGGVLTTSGDLSFINNTSVLCQNNISYGPGGALLLQGRKSKALFFRDNRG
HEEEEECCCCCCEEEEECCCEEEECCCEEEEECCCCCCCCCEEEEECCCCCEEEEECCCC
TILFLKNKAVNQDESHPGYGGAVSSISPGSPITFADNQEILFQENEGELGGAIYNDQGAI
EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCEEECCCCEE
TFENNFQTTSFFSNKASFGGAVYSRYCNLYSQWGDTLFTKNAAAKVGGAIHADYVHIRDC
EECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHCCCCEEEEEEEEEEC
KGSIVFEENSATAGGAIAVNAVCDINAQGPVRFINNSALGLNGGAIYMQATGSILRLHAN
CCEEEEECCCCCCCCEEEEEEEEECCCCCCEEEECCCEEECCCCEEEEEECCEEEEEECC
QGDIEFCGNKVRSQFHSHINSTSNFTNNAITIQGAPREFSLSANEGHRICFYDPIISATE
CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCC
NYNSLYINHQRLLEAGGAVIFSGARLSPEHKKDNKNKTSIINQPVRLCSGVLSIEGGAIL
CCCEEEEEHHHHHHCCCEEEEECCCCCCHHCCCCCCHHHHHHHHHHHHCCCEEECCCEEE
AVRSFYQEGGLLALGPGSKLTTQGKNSEKDKIVITNLGFNLENLDSSDPAEIRATEKASI
EEEHHHHCCCEEEECCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCEE
EISGVPRVYGHTESFYENHEYASKPYTTSIILSAKKLVTAPSRPEKDIQNLIIAESEYMG
EEECCCEECCCCHHHHCCCCCCCCCCEEEEEEEEHHHCCCCCCCHHHHHHEEEECCHHCC
YGYQGSWEFSWSPNDTKEKKTIIASWTPTGEFSLDPKRRGSFIPTTLWSTFSGLNIASNI
CCCCCCEEEECCCCCCCCCEEEEEEECCCCCEECCHHHCCCCCCHHHHHHHCCCHHHHHH
VNNNYLNNSEVIPLQHLCVFGGPVYQIMEQNPKQSSNNLLVQHAGHNVGARIPFSFNTIL
HCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCEEEEECCCCCCEECCCCHHHHH
SAALTQLFSSSSQQNVADKSHAQILIGTVSLNKSWQALSLRSSFSYTEDSQVMKHVFPYK
HHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHCCCC
GTSRGSWRNYGWSGSVGMSYAYPKGIRYLKMTPFVDLQYTKLVQNPFVETGYDPRYFSSS
CCCCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCEECCC
EMTNLSLPIGIALEMRFIGSRSSLFLQVSTSYIKDLRRVNPQSSASLVLNHYTWDIQGVP
CCCEEECCEEEEEEEEEECCCCEEEEEEEHHHHHHHHHCCCCCCCEEEEEEEEEEEECCC
LGKEALNITLNSTIKYKIVTAYMGISSTQREGSNLSANAHAGLSLSF
CCHHHEEEEECCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECC
>Mature Secondary Structure
MKQMRLWGFLFLSSFCQVSYLRANDVLLPLSGIHSGEDLELFTLRSSSPTKTTYSLRKDF
CCCHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCE
IVCDFAGNSIHKPGAAFLNLKGDLFFINSTPLAALTFKNIHLGARGAGLFSESNVTFKGL
EEEEECCCCCCCCCCEEEEECCCEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCHHHH
HSLVLENNESWGGVLTTSGDLSFINNTSVLCQNNISYGPGGALLLQGRKSKALFFRDNRG
HEEEEECCCCCCEEEEECCCEEEECCCEEEEECCCCCCCCCEEEEECCCCCEEEEECCCC
TILFLKNKAVNQDESHPGYGGAVSSISPGSPITFADNQEILFQENEGELGGAIYNDQGAI
EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCEEECCCCEE
TFENNFQTTSFFSNKASFGGAVYSRYCNLYSQWGDTLFTKNAAAKVGGAIHADYVHIRDC
EECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHCCCCEEEEEEEEEEC
KGSIVFEENSATAGGAIAVNAVCDINAQGPVRFINNSALGLNGGAIYMQATGSILRLHAN
CCEEEEECCCCCCCCEEEEEEEEECCCCCCEEEECCCEEECCCCEEEEEECCEEEEEECC
QGDIEFCGNKVRSQFHSHINSTSNFTNNAITIQGAPREFSLSANEGHRICFYDPIISATE
CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCC
NYNSLYINHQRLLEAGGAVIFSGARLSPEHKKDNKNKTSIINQPVRLCSGVLSIEGGAIL
CCCEEEEEHHHHHHCCCEEEEECCCCCCHHCCCCCCHHHHHHHHHHHHCCCEEECCCEEE
AVRSFYQEGGLLALGPGSKLTTQGKNSEKDKIVITNLGFNLENLDSSDPAEIRATEKASI
EEEHHHHCCCEEEECCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCEE
EISGVPRVYGHTESFYENHEYASKPYTTSIILSAKKLVTAPSRPEKDIQNLIIAESEYMG
EEECCCEECCCCHHHHCCCCCCCCCCEEEEEEEEHHHCCCCCCCHHHHHHEEEECCHHCC
YGYQGSWEFSWSPNDTKEKKTIIASWTPTGEFSLDPKRRGSFIPTTLWSTFSGLNIASNI
CCCCCCEEEECCCCCCCCCEEEEEEECCCCCEECCHHHCCCCCCHHHHHHHCCCHHHHHH
VNNNYLNNSEVIPLQHLCVFGGPVYQIMEQNPKQSSNNLLVQHAGHNVGARIPFSFNTIL
HCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCEEEEECCCCCCEECCCCHHHHH
SAALTQLFSSSSQQNVADKSHAQILIGTVSLNKSWQALSLRSSFSYTEDSQVMKHVFPYK
HHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHCCCC
GTSRGSWRNYGWSGSVGMSYAYPKGIRYLKMTPFVDLQYTKLVQNPFVETGYDPRYFSSS
CCCCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCEECCC
EMTNLSLPIGIALEMRFIGSRSSLFLQVSTSYIKDLRRVNPQSSASLVLNHYTWDIQGVP
CCCEEECCEEEEEEEEEECCCCEEEEEEEHHHHHHHHHCCCCCCCEEEEEEEEEEEECCC
LGKEALNITLNSTIKYKIVTAYMGISSTQREGSNLSANAHAGLSLSF
CCHHHEEEEECCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362; 10839753 [H]