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The map label for this gene is ydhO

Identifier: 15835780

GI number: 15835780

Start: 281267

End: 282124

Strand: Direct

Name: ydhO

Synonym: CPj0245

Alternate gene names: 15835780

Gene position: 281267-282124 (Clockwise)

Preceding gene: 15835779

Following gene: 15835786

Centisome position: 22.93

GC content: 40.79

Gene sequence:

>858_bases
ATGAAACACTACCTATCATTTTCTCCTTCTGCTGATTTTTTCTCTAAACAAGGTGCTATTGAAACTCAAGTCCTTTTTGG
AGAGCGCGTCTTAGTCAAAGGGAGCACCTGCTATGCATATTCCCAATTATTCCACAATGAGCTGTTATGGAAGCCCTATC
CAGGTCATAGCTTTCGTTCTACCCTAGTCCCCTGCACTCCTGAATTTCATATCCATCCAAATGTTTCTGTGGTTTCTGTG
GATGCATTTTTAGATCCTTGGGGGATCCCTCTTCCTTTTGGAACTTTACTCCATGTGAATTCTCAAAATACCGTTATTTT
CCCTAAGGATATTCTCAATCATATGAACACCATCTGGGGCTCCGGCACACCTCAATGCGATCCTAGACATCTACGTCGTC
TAAATTATAACTTCCTTGCTGAACTTTTAATTAAAGACGCAGACCTTTTACTGAACTTTCCCTATGTATGGGGAGGACGG
TCTGTACACGAAAGTCTGGAAAAGCCGGGTGTTGATTGTTCGGGATTTATCAATATCCTTTACCAGGCACAGGGATACAA
CGTCCCTAGAAACGCTGCAGATCAATATGCGGATTGTCATTGGATCTCTAGCTTTGAGAACCTTCCTTCTGGTGGGTTAA
TATTTCTTTACCCTAAAGAAGAAAAGCGTATTTCTCATGTTATGTTGAAACAGGATAGTTCCACCCTCATTCATGCTTCT
GGTGGAGGGAAAAAAGTGGAGTATTTCATTTTAGAACAAGATGGGAAGTTTTTAGATTCGACTTATCTATTTTTTAGAAA
TAATCAGAGGGGACGGGCATTTTTTGGGATCCCTAGAAAAAGAAAAGCCTTTCTGTAA

Upstream 100 bases:

>100_bases
TGCATTTATAAATAGTTTTTCTTCCTTCCAAAGAAAAGTACCGAATTCACCCGAAAAAAATTCACTCAGAACCTTGTCTT
AAACTTGTCAGAAGGAAATT

Downstream 100 bases:

>100_bases
TAAGAAAGGCTTTTTCCAAAAACGATTCGAAAAACGGTAAATATCTTAACGCTTAGAGAATTGGAAGCTTTTACGAGCTT
TTTTATGTCCGTATTTTTTA

Product: polysaccharide hydrolase-invasin repeat-containing protein

Products: NA

Alternate protein names: Cell wall endopeptidase ykfC [H]

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MKHYLSFSPSADFFSKQGAIETQVLFGERVLVKGSTCYAYSQLFHNELLWKPYPGHSFRSTLVPCTPEFHIHPNVSVVSV
DAFLDPWGIPLPFGTLLHVNSQNTVIFPKDILNHMNTIWGSGTPQCDPRHLRRLNYNFLAELLIKDADLLLNFPYVWGGR
SVHESLEKPGVDCSGFINILYQAQGYNVPRNAADQYADCHWISSFENLPSGGLIFLYPKEEKRISHVMLKQDSSTLIHAS
GGGKKVEYFILEQDGKFLDSTYLFFRNNQRGRAFFGIPRKRKAFL

Sequences:

>Translated_285_residues
MKHYLSFSPSADFFSKQGAIETQVLFGERVLVKGSTCYAYSQLFHNELLWKPYPGHSFRSTLVPCTPEFHIHPNVSVVSV
DAFLDPWGIPLPFGTLLHVNSQNTVIFPKDILNHMNTIWGSGTPQCDPRHLRRLNYNFLAELLIKDADLLLNFPYVWGGR
SVHESLEKPGVDCSGFINILYQAQGYNVPRNAADQYADCHWISSFENLPSGGLIFLYPKEEKRISHVMLKQDSSTLIHAS
GGGKKVEYFILEQDGKFLDSTYLFFRNNQRGRAFFGIPRKRKAFL
>Mature_285_residues
MKHYLSFSPSADFFSKQGAIETQVLFGERVLVKGSTCYAYSQLFHNELLWKPYPGHSFRSTLVPCTPEFHIHPNVSVVSV
DAFLDPWGIPLPFGTLLHVNSQNTVIFPKDILNHMNTIWGSGTPQCDPRHLRRLNYNFLAELLIKDADLLLNFPYVWGGR
SVHESLEKPGVDCSGFINILYQAQGYNVPRNAADQYADCHWISSFENLPSGGLIFLYPKEEKRISHVMLKQDSSTLIHAS
GGGKKVEYFILEQDGKFLDSTYLFFRNNQRGRAFFGIPRKRKAFL

Specific function: Specifically hydrolyzes gamma-D-glutamyl-L-lysine bonds in murein peptides, releasing L-Ala-D-Glu [H]

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 32495; Mature: 32495

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHYLSFSPSADFFSKQGAIETQVLFGERVLVKGSTCYAYSQLFHNELLWKPYPGHSFRS
CCCEECCCCCCHHHHCCCCCEEEEEECCEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHC
TLVPCTPEFHIHPNVSVVSVDAFLDPWGIPLPFGTLLHVNSQNTVIFPKDILNHMNTIWG
CCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHCC
SGTPQCDPRHLRRLNYNFLAELLIKDADLLLNFPYVWGGRSVHESLEKPGVDCSGFINIL
CCCCCCCHHHHHHCCHHHHHHHHHCCCHHEEECCEEECCHHHHHHHHCCCCCHHHHEEEE
YQAQGYNVPRNAADQYADCHWISSFENLPSGGLIFLYPKEEKRISHVMLKQDSSTLIHAS
EEECCCCCCCCHHHHHCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHEEECCCCEEEEEC
GGGKKVEYFILEQDGKFLDSTYLFFRNNQRGRAFFGIPRKRKAFL
CCCCEEEEEEECCCCCEECEEEEEEECCCCCCEEECCCCHHCCCC
>Mature Secondary Structure
MKHYLSFSPSADFFSKQGAIETQVLFGERVLVKGSTCYAYSQLFHNELLWKPYPGHSFRS
CCCEECCCCCCHHHHCCCCCEEEEEECCEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHC
TLVPCTPEFHIHPNVSVVSVDAFLDPWGIPLPFGTLLHVNSQNTVIFPKDILNHMNTIWG
CCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHCC
SGTPQCDPRHLRRLNYNFLAELLIKDADLLLNFPYVWGGRSVHESLEKPGVDCSGFINIL
CCCCCCCHHHHHHCCHHHHHHHHHCCCHHEEECCEEECCHHHHHHHHCCCCCHHHHEEEE
YQAQGYNVPRNAADQYADCHWISSFENLPSGGLIFLYPKEEKRISHVMLKQDSSTLIHAS
EEECCCCCCCCHHHHHCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHEEECCCCEEEEEC
GGGKKVEYFILEQDGKFLDSTYLFFRNNQRGRAFFGIPRKRKAFL
CCCCEEEEEEECCCCCEECEEEEEEECCCCCCEEECCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]