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The map label for this gene is rplJ

Identifier: 15835614

GI number: 15835614

Start: 92849

End: 93361

Strand: Direct

Name: rplJ

Synonym: CPj0079

Alternate gene names: 15835614

Gene position: 92849-93361 (Clockwise)

Preceding gene: 15835613

Following gene: 15835615

Centisome position: 7.57

GC content: 40.35

Gene sequence:

>513_bases
ATGAAACAAGAAAAAACATTACTTCTTCAAGAGGTAGAAGACAAAATTTCCGCAGCACAGGGATTCATTTTATTAAGATA
CCTTAGATTTACCGCCGCGTATTCTAGAGAATTCAGAAACTCACTTTCTGGAGTTTCTGCAGAATTTGAAGTTTTAAAGA
AGAGAATCTTCTTTAAAGCTATAGAAGCTGCAGGTTTAGAGGTAGATTGTAGTGATACAGATGGGCATCTCGGTGTAGTC
TTTTCCTGTGGAGATCCTGTTTCTGCCGCAAAGCAGGTACTGGACTTTAATAAACAACATAAAGACTCTTTAGTTTTCCT
CGCTGGAAGGATGGACAATGCGTCTCTGTCTGGTGCAGAGGTAGAAGCTGTCGCCAAATTGCCATCTCTTAAAGAACTTA
GACAGCAGGTTGTTGGTTTATTCGCTGCTCCAATGTCCCAAGTTGTAGGAATTATGAATTCTGTCCTTTCTGGAGTGATC
TCCTGTGTGGATCAAAAGGCAGGAAAGAACTAA

Upstream 100 bases:

>100_bases
AGGTCAATATTTAGTCTCATTCACTATTTCTTCCACTATGGGGCCTGGTATTTCTATAGATACTAGAGAATTAATGGCAT
CTTAATCTTAAAGAGGGAAA

Downstream 100 bases:

>100_bases
AGAATTAAAATTAAAACTCTCAAAATAAGTAAGGGTGACAAAAGTGACAACAGAAAGTTTGGAAACTTTAGTAGAGAAGT
TAAGTAATTTAACTGTACTA

Product: 50S ribosomal protein L10

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MKQEKTLLLQEVEDKISAAQGFILLRYLRFTAAYSREFRNSLSGVSAEFEVLKKRIFFKAIEAAGLEVDCSDTDGHLGVV
FSCGDPVSAAKQVLDFNKQHKDSLVFLAGRMDNASLSGAEVEAVAKLPSLKELRQQVVGLFAAPMSQVVGIMNSVLSGVI
SCVDQKAGKN

Sequences:

>Translated_170_residues
MKQEKTLLLQEVEDKISAAQGFILLRYLRFTAAYSREFRNSLSGVSAEFEVLKKRIFFKAIEAAGLEVDCSDTDGHLGVV
FSCGDPVSAAKQVLDFNKQHKDSLVFLAGRMDNASLSGAEVEAVAKLPSLKELRQQVVGLFAAPMSQVVGIMNSVLSGVI
SCVDQKAGKN
>Mature_170_residues
MKQEKTLLLQEVEDKISAAQGFILLRYLRFTAAYSREFRNSLSGVSAEFEVLKKRIFFKAIEAAGLEVDCSDTDGHLGVV
FSCGDPVSAAKQVLDFNKQHKDSLVFLAGRMDNASLSGAEVEAVAKLPSLKELRQQVVGLFAAPMSQVVGIMNSVLSGVI
SCVDQKAGKN

Specific function: Unknown

COG id: COG0244

COG function: function code J; Ribosomal protein L10

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL10_CHLPN (Q9Z9A2)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   B72122
- PIR:   G86500
- RefSeq:   NP_224287.1
- RefSeq:   NP_300138.1
- RefSeq:   NP_445238.1
- RefSeq:   NP_876355.1
- ProteinModelPortal:   Q9Z9A2
- SMR:   Q9Z9A2
- PHCI-2DPAGE:   Q9Z9A2
- GeneID:   1466762
- GeneID:   894706
- GeneID:   918871
- GeneID:   963209
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0696
- KEGG:   cpn:CPn0079
- KEGG:   cpt:CpB0079
- TIGR:   CP_0696
- HOGENOM:   HBG414036
- OMA:   KRIFFKA
- ProtClustDB:   PRK00099
- BioCyc:   CPNE115711:CP_0696-MONOMER
- BioCyc:   CPNE115713:CPN0079-MONOMER
- BioCyc:   CPNE138677:CPJ0079-MONOMER
- BioCyc:   CPNE182082:CPB0079-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00362
- InterPro:   IPR022973
- InterPro:   IPR001790

Pfam domain/function: PF00466 Ribosomal_L10

EC number: NA

Molecular weight: Translated: 18429; Mature: 18429

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS01109 RIBOSOMAL_L10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQEKTLLLQEVEDKISAAQGFILLRYLRFTAAYSREFRNSLSGVSAEFEVLKKRIFFKA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
IEAAGLEVDCSDTDGHLGVVFSCGDPVSAAKQVLDFNKQHKDSLVFLAGRMDNASLSGAE
HHHCCCEEECCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHH
VEAVAKLPSLKELRQQVVGLFAAPMSQVVGIMNSVLSGVISCVDQKAGKN
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKQEKTLLLQEVEDKISAAQGFILLRYLRFTAAYSREFRNSLSGVSAEFEVLKKRIFFKA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
IEAAGLEVDCSDTDGHLGVVFSCGDPVSAAKQVLDFNKQHKDSLVFLAGRMDNASLSGAE
HHHCCCEEECCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHH
VEAVAKLPSLKELRQQVVGLFAAPMSQVVGIMNSVLSGVISCVDQKAGKN
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362