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The map label for this gene is sodM

Identifier: 15835593

GI number: 15835593

Start: 72610

End: 73233

Strand: Direct

Name: sodM

Synonym: CPj0057

Alternate gene names: 15835593

Gene position: 72610-73233 (Clockwise)

Preceding gene: 15835592

Following gene: 15835594

Centisome position: 5.92

GC content: 40.06

Gene sequence:

>624_bases
ATGAGTTTTGTTCCTTATTCTTTACCAGAGTTACCCTATGATTATGACGCTTTGGAGCCTGTAATTTCTTCTGAAATTAT
GATTTTACACCACCAAAAGCATCATCAGATCTACATTAATAATCTTAACGCGGCTTTGAAGAGATTAGATGCTGCAGAAA
CACAACAAAACCTTAATGAACTCATTGCTTTAGAACCCGCTCTCCGCTTTAACGGGGGAGGACACATCAACCACTCTCTA
TTCTGGGAAACTCTTGCTCCTATCGATCAAGGGGGAGGACAGCCTCCAAAACATGAGCTCCTTTCTCTTATTGAAAGATT
TTGGGGTACGATGGACAACTTTTTAAAAAAATTAATCGAAGTTGCTGCAGGAGTTCAAGGCTCCGGTTGGGCCTGGCTAG
GATTTTGTCCCGCAAAACAAGAACTTGTCTTACAAGCAACAGCAAATCAGGATCCTCTAGAGCCTCTCACGGGGAAACTC
CCTCTGCTTGGCGTGGATGTTTGGGAGCACGCCTATTACCTGCAATATAAAAATGTTCGTATGGATTATTTAAAAGCCTT
TCCTCAAATAATTAATTGGGGACATATAGAAAATAGATTTTCTGAAATAATATCATCTAAATAA

Upstream 100 bases:

>100_bases
ATTGTTGTATCCGAAACAAGGTTGAGTAGAGTACTTGCTTTCCTAGCAAAACTTTCTGAACTTAAATCAAGGAGGTTAAA
TACTAAAAAGGTATGTTGTT

Downstream 100 bases:

>100_bases
TTTGAATTTGGTGATTTTAATTGCAGTGTTAATAACATTAATTTAAAATTGCTTCCTAACAGAACCTAGATTAGGTGGCT
TGTGCGTCTATTTTCTTACG

Product: superoxide dismutase (Mn)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MSFVPYSLPELPYDYDALEPVISSEIMILHHQKHHQIYINNLNAALKRLDAAETQQNLNELIALEPALRFNGGGHINHSL
FWETLAPIDQGGGQPPKHELLSLIERFWGTMDNFLKKLIEVAAGVQGSGWAWLGFCPAKQELVLQATANQDPLEPLTGKL
PLLGVDVWEHAYYLQYKNVRMDYLKAFPQIINWGHIENRFSEIISSK

Sequences:

>Translated_207_residues
MSFVPYSLPELPYDYDALEPVISSEIMILHHQKHHQIYINNLNAALKRLDAAETQQNLNELIALEPALRFNGGGHINHSL
FWETLAPIDQGGGQPPKHELLSLIERFWGTMDNFLKKLIEVAAGVQGSGWAWLGFCPAKQELVLQATANQDPLEPLTGKL
PLLGVDVWEHAYYLQYKNVRMDYLKAFPQIINWGHIENRFSEIISSK
>Mature_206_residues
SFVPYSLPELPYDYDALEPVISSEIMILHHQKHHQIYINNLNAALKRLDAAETQQNLNELIALEPALRFNGGGHINHSLF
WETLAPIDQGGGQPPKHELLSLIERFWGTMDNFLKKLIEVAAGVQGSGWAWLGFCPAKQELVLQATANQDPLEPLTGKLP
LLGVDVWEHAYYLQYKNVRMDYLKAFPQIINWGHIENRFSEIISSK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family

Homologues:

Organism=Homo sapiens, GI67782307, Length=195, Percent_Identity=55.8974358974359, Blast_Score=228, Evalue=4e-60,
Organism=Homo sapiens, GI67782305, Length=195, Percent_Identity=55.8974358974359, Blast_Score=228, Evalue=4e-60,
Organism=Homo sapiens, GI67782309, Length=195, Percent_Identity=45.1282051282051, Blast_Score=164, Evalue=7e-41,
Organism=Escherichia coli, GI1790342, Length=210, Percent_Identity=44.7619047619048, Blast_Score=161, Evalue=3e-41,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=38.0208333333333, Blast_Score=121, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17506561, Length=197, Percent_Identity=56.8527918781726, Blast_Score=234, Evalue=3e-62,
Organism=Caenorhabditis elegans, GI17569479, Length=196, Percent_Identity=56.6326530612245, Blast_Score=229, Evalue=6e-61,
Organism=Saccharomyces cerevisiae, GI6321796, Length=204, Percent_Identity=43.1372549019608, Blast_Score=164, Evalue=8e-42,
Organism=Drosophila melanogaster, GI17136812, Length=197, Percent_Identity=54.8223350253807, Blast_Score=226, Evalue=6e-60,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): SODM_CHLPN (Q9Z9C4)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   B72124
- PIR:   B86498
- RefSeq:   NP_224265.1
- RefSeq:   NP_300117.1
- RefSeq:   NP_445260.1
- RefSeq:   NP_876334.1
- ProteinModelPortal:   Q9Z9C4
- SMR:   Q9Z9C4
- PHCI-2DPAGE:   Q9Z9C4
- GeneID:   1466741
- GeneID:   894772
- GeneID:   918846
- GeneID:   963182
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0718
- KEGG:   cpn:CPn0057
- KEGG:   cpt:CpB0058
- TIGR:   CP_0718
- HOGENOM:   HBG507761
- OMA:   PPKHELL
- PhylomeDB:   Q9Z9C4
- ProtClustDB:   CLSK871309
- BioCyc:   CPNE115711:CP_0718-MONOMER
- BioCyc:   CPNE115713:CPN0057-MONOMER
- BioCyc:   CPNE138677:CPJ0057-MONOMER
- BioCyc:   CPNE182082:CPB0058-MONOMER
- BRENDA:   1.15.1.1
- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831
- PANTHER:   PTHR11404
- PIRSF:   PIRSF000349
- PRINTS:   PR01703

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N; SSF46609 SODismutase; SSF54719 SODismutase

EC number: =1.15.1.1

Molecular weight: Translated: 23541; Mature: 23410

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFVPYSLPELPYDYDALEPVISSEIMILHHQKHHQIYINNLNAALKRLDAAETQQNLNE
CCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHH
LIALEPALRFNGGGHINHSLFWETLAPIDQGGGQPPKHELLSLIERFWGTMDNFLKKLIE
HHHHCCHHEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VAAGVQGSGWAWLGFCPAKQELVLQATANQDPLEPLTGKLPLLGVDVWEHAYYLQYKNVR
HHCCCCCCCEEEEEECCCCHHEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHEEECCCH
MDYLKAFPQIINWGHIENRFSEIISSK
HHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SFVPYSLPELPYDYDALEPVISSEIMILHHQKHHQIYINNLNAALKRLDAAETQQNLNE
CCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHH
LIALEPALRFNGGGHINHSLFWETLAPIDQGGGQPPKHELLSLIERFWGTMDNFLKKLIE
HHHHCCHHEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VAAGVQGSGWAWLGFCPAKQELVLQATANQDPLEPLTGKLPLLGVDVWEHAYYLQYKNVR
HHCCCCCCCEEEEEECCCCHHEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHEEECCCH
MDYLKAFPQIINWGHIENRFSEIISSK
HHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362