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The map label for this gene is omcA

Identifier: 15835343

GI number: 15835343

Start: 866394

End: 866660

Strand: Reverse

Name: omcA

Synonym: TC0728

Alternate gene names: 15835343

Gene position: 866660-866394 (Counterclockwise)

Preceding gene: 15835345

Following gene: 15835342

Centisome position: 80.77

GC content: 43.45

Gene sequence:

>267_bases
ATGAAAAAAACTGCTTTGCTCGCTGCTTTATGTAGTGTTGTTTCTTTAAGTAGTTGTTGTCGTATCGTTGACTGTTGCTT
CGAAGATCCATGCGCACCTATTAAATGTTCCCCCTGTGAATCTAAGAAGAGAGAAGTAAACGGTGGTTGCAACTCTTGTA
ACGGGTATGTCCCATCTTGCAAACCTTGCGGTGGGGAATTAGACCATGAAACTAAACAAGGCCCTCAAGCTAGAGGCATT
CAGGCTGATGGCAGATGTAGACAATAG

Upstream 100 bases:

>100_bases
ATATTGTCTGTGAGGGCCAGTTTCTTTTATTGGTAAAAGAATTGCTTTTGTTAATAAAAGAAACTTCGAGAGCCCTTTTC
TAGAAAGGAGTCTGGAAGTT

Downstream 100 bases:

>100_bases
GTAGCGCAAGTTAAAAGCCTACCCACAACAGATGTAGTTAGTAAGGAAAATGCTTTTCCTTACTAACTATTTCGGATAAA
AGAAAAATGTGTAGGGTAAA

Product: OmcA

Products: NA

Alternate protein names: Small-CRP; 9 kDa cysteine-rich lipoprotein; 9KD-CRP

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MKKTALLAALCSVVSLSSCCRIVDCCFEDPCAPIKCSPCESKKREVNGGCNSCNGYVPSCKPCGGELDHETKQGPQARGI
QADGRCRQ

Sequences:

>Translated_88_residues
MKKTALLAALCSVVSLSSCCRIVDCCFEDPCAPIKCSPCESKKREVNGGCNSCNGYVPSCKPCGGELDHETKQGPQARGI
QADGRCRQ
>Mature_88_residues
MKKTALLAALCSVVSLSSCCRIVDCCFEDPCAPIKCSPCESKKREVNGGCNSCNGYVPSCKPCGGELDHETKQGPQARGI
QADGRCRQ

Specific function: In elementary bodies (EBs, the infectious stage, which is able to survive outside the host cell) provides the structural integrity of the outer envelope through disulfide cross-links with the large cysteine-rich periplasmic protein and the major outer mem

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential). Note=The protein moiety probably penetrates into the periplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OMCA_CHLMU (Q9PJU9)

Other databases:

- EMBL:   AE002160
- PIR:   D81671
- RefSeq:   NP_297102.1
- GeneID:   1246091
- GenomeReviews:   AE002160_GR
- KEGG:   cmu:TC0728
- TIGR:   TC_0728
- HOGENOM:   HBG414080
- OMA:   EDPCAPK
- ProtClustDB:   CLSK871384
- BioCyc:   CMUR243161:TC_0728-MONOMER
- InterPro:   IPR003517
- PRINTS:   PR01335
- ProDom:   PD009138

Pfam domain/function: PF03503 Chlam_OMP3

EC number: NA

Molecular weight: Translated: 9342; Mature: 9342

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

14.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
15.9 %Cys+Met (Translated Protein)
14.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
15.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTALLAALCSVVSLSSCCRIVDCCFEDPCAPIKCSPCESKKREVNGGCNSCNGYVPSC
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
KPCGGELDHETKQGPQARGIQADGRCRQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKTALLAALCSVVSLSSCCRIVDCCFEDPCAPIKCSPCESKKREVNGGCNSCNGYVPSC
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
KPCGGELDHETKQGPQARGIQADGRCRQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10684935