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The map label for this gene is atpD

Identifier: 15835197

GI number: 15835197

Start: 693242

End: 693853

Strand: Reverse

Name: atpD

Synonym: TC0580

Alternate gene names: 15835197

Gene position: 693853-693242 (Counterclockwise)

Preceding gene: 15835198

Following gene: 15835196

Centisome position: 64.67

GC content: 38.07

Gene sequence:

>612_bases
ATGTCTTCACAAATAAAATTAACGAAAAATTCTTATCGAGCTGAGAAACAAAAGCTTAATCTATTGGGGATGTATCTTCC
TACATTGAAGTTGAAGAAGGCTTTATTGCAGGCTGAAGTACAATCTGCAATGCGTTCCGCAGCAGAAAGTATGGCAGCTA
ATGAACAGGCTCGAGATAGGATGCATGCTTTTGCAGAACTTTTCAGCATCCCCCTCTATACGGATGCTGTTGAGCAATGT
TTTTCTATCGATATTTTTGAAAAGGATGTTGAGAATATCGCTGGAGTGGAAGTTCCTTTGTTGAAGCGCGTTGTACTGAC
TTCTCTAGAATATTCTTTGCTGGATACCCCTATTTGGATAGATTCTTTAATTGCATCCGCAAAAGAGTATGTTCTGAGTA
AAATTTATGCTGAAAATGCTCAAGAGAGACTGCGTCTTTTGGAAGAAGAGCTTCGTCGTGTCTCCATTCGGGTTAATCTT
TTTGAAAAAAAATTAATACCGACAACTTCGCAAACGATTAAAAAGATAGCTATTTTCTTAAGTGATCGGAGTATTACCGA
TGTGGGTCAGATGAAAATGGCTAAGAAAAAAATTCAGCAGCATAAGGAGTAG

Upstream 100 bases:

>100_bases
AAGAAGCTTTAGATATCGGATGGAAAATTTTGGCACAAAGTTTTCATTCTGAGGAAGTTGGAATTAAAGAGCAGTTGATT
CAGAAATATTGGCCGAAAGC

Downstream 100 bases:

>100_bases
TCTGCATGCGCATAAACGTGGATAAATACTTATTTATTGGACGTAAAAAGTCTGAATTTTTCTCTGCGTGCCGAGAGCTT
GGAGCTGTCGAATTTTTGGC

Product: V-type ATP synthase subunit D

Products: ADP; phosphate; H+

Alternate protein names: V-ATPase subunit D

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MSSQIKLTKNSYRAEKQKLNLLGMYLPTLKLKKALLQAEVQSAMRSAAESMAANEQARDRMHAFAELFSIPLYTDAVEQC
FSIDIFEKDVENIAGVEVPLLKRVVLTSLEYSLLDTPIWIDSLIASAKEYVLSKIYAENAQERLRLLEEELRRVSIRVNL
FEKKLIPTTSQTIKKIAIFLSDRSITDVGQMKMAKKKIQQHKE

Sequences:

>Translated_203_residues
MSSQIKLTKNSYRAEKQKLNLLGMYLPTLKLKKALLQAEVQSAMRSAAESMAANEQARDRMHAFAELFSIPLYTDAVEQC
FSIDIFEKDVENIAGVEVPLLKRVVLTSLEYSLLDTPIWIDSLIASAKEYVLSKIYAENAQERLRLLEEELRRVSIRVNL
FEKKLIPTTSQTIKKIAIFLSDRSITDVGQMKMAKKKIQQHKE
>Mature_202_residues
SSQIKLTKNSYRAEKQKLNLLGMYLPTLKLKKALLQAEVQSAMRSAAESMAANEQARDRMHAFAELFSIPLYTDAVEQCF
SIDIFEKDVENIAGVEVPLLKRVVLTSLEYSLLDTPIWIDSLIASAKEYVLSKIYAENAQERLRLLEEELRRVSIRVNLF
EKKLIPTTSQTIKKIAIFLSDRSITDVGQMKMAKKKIQQHKE

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG1394

COG function: function code C; Archaeal/vacuolar-type H+-ATPase subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the V-ATPase D subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VATD_CHLMU (Q9PK87)

Other databases:

- EMBL:   AE002160
- RefSeq:   NP_296956.1
- GeneID:   1245939
- GenomeReviews:   AE002160_GR
- KEGG:   cmu:TC0580
- TIGR:   TC_0580
- HOGENOM:   HBG352980
- OMA:   LFEKVMI
- ProtClustDB:   PRK02195
- BioCyc:   CMUR243161:TC_0580-MONOMER
- BRENDA:   3.6.3.14
- HAMAP:   MF_00271
- InterPro:   IPR002699
- TIGRFAMs:   TIGR00309

Pfam domain/function: PF01813 ATP-synt_D

EC number: 3.6.3.14

Molecular weight: Translated: 23223; Mature: 23092

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQIKLTKNSYRAEKQKLNLLGMYLPTLKLKKALLQAEVQSAMRSAAESMAANEQARDR
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MHAFAELFSIPLYTDAVEQCFSIDIFEKDVENIAGVEVPLLKRVVLTSLEYSLLDTPIWI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHH
DSLIASAKEYVLSKIYAENAQERLRLLEEELRRVSIRVNLFEKKLIPTTSQTIKKIAIFL
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SDRSITDVGQMKMAKKKIQQHKE
CCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSQIKLTKNSYRAEKQKLNLLGMYLPTLKLKKALLQAEVQSAMRSAAESMAANEQARDR
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MHAFAELFSIPLYTDAVEQCFSIDIFEKDVENIAGVEVPLLKRVVLTSLEYSLLDTPIWI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHH
DSLIASAKEYVLSKIYAENAQERLRLLEEELRRVSIRVNLFEKKLIPTTSQTIKKIAIFL
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SDRSITDVGQMKMAKKKIQQHKE
CCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10684935