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Identifier: 15835032

GI number: 15835032

Start: 474685

End: 475527

Strand: Direct

Name: Not Available

Synonym: TC0414

Alternate gene names: 15835032

Gene position: 474685-475527 (Clockwise)

Preceding gene: 15835031

Following gene: 15835033

Centisome position: 44.24

GC content: 39.74

Gene sequence:

>843_bases
GTGCTTTCTCAGCATATTGAAAGAATTAGGTCTGGGCAAGTCTTTGCTTTCCCGACGGATACAGTGTATGGGCTAGGAGT
CTCGTTTCTCATACCTGAAGCTGATAAGCAGTTATTTGCTCTTAAGCGTAGGAATCCTCAAAAAGCTTTATCTGTTTATG
TTTCTTCTCTTGAAGAATTGGAGTATGTTGCCCAGCGCCGCTTAGGAGAGGCTTCAATTAAGATTGCTCAAAAATTTCTT
CCCGGTCCACTCACATTAATTACCAAACATAATAACCCAAGATTTTCTCAAAAAACGTTAGGATTTCGAATAGTTGAACA
TCCCATAGTGAAGCAAATTATCCAAGAAGTAGGTCCCTTGCTTGCCACCTCAGCAAATGTATCGGGGTTCCCTTCGGCGG
TTTCTTCTGATGAAGTAAAGCAGGATTTCCCTGAAAAAGATATTTTAGTGATTTCTGGGACTTGCTCTATAGGATTGGAA
TCTACTGTAGTAGATGCTGAAGAGCGTATCATTTATCGAGAAGGGGTGGTATCTGCTGCGGAAATAGAAGATGTTTTACA
AGCAAAATGTACTTGTTCCCCTAGAAGCCAGTCTTTTAGGGAAAGTATTCGTATTTACGTTGTAAAAAATCATGTGGATT
TGAGCTCTTTTCTCTCTGCTAAGCTAGCCTTCAAGGGAGTTATTTGTCAGCATCCTCAGCCATGCACTTTTTACTCGGTT
TTGAGACAAGCTTTGCGATCTTCTACTCAAGAAGTGATTTTTGTTTATGATGAAAAAAATACGGAATACCCAGTTCTTTC
AAGGTTTTTAGGAGCAAGTTATGATAGTGGATATGCATTGTGA

Upstream 100 bases:

>100_bases
TTGTTTCTTTTCATGGAGGCCATGAAATTCCCGTTGTTATGATGCAAAAAATACAGGAAAGCATCACGCTTTGGAACCAG
CAGATATAGAGAGGTCAGGC

Downstream 100 bases:

>100_bases
CATGTTATCTCATGAAAATTTTTCTCCTGCAAATCCAGCCGTAAGAAGTTCTCCCGACCAATTAATAGAAGGGGGAGTTA
ATGTACAGGTATGTGCTCTA

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MLSQHIERIRSGQVFAFPTDTVYGLGVSFLIPEADKQLFALKRRNPQKALSVYVSSLEELEYVAQRRLGEASIKIAQKFL
PGPLTLITKHNNPRFSQKTLGFRIVEHPIVKQIIQEVGPLLATSANVSGFPSAVSSDEVKQDFPEKDILVISGTCSIGLE
STVVDAEERIIYREGVVSAAEIEDVLQAKCTCSPRSQSFRESIRIYVVKNHVDLSSFLSAKLAFKGVICQHPQPCTFYSV
LRQALRSSTQEVIFVYDEKNTEYPVLSRFLGASYDSGYAL

Sequences:

>Translated_280_residues
MLSQHIERIRSGQVFAFPTDTVYGLGVSFLIPEADKQLFALKRRNPQKALSVYVSSLEELEYVAQRRLGEASIKIAQKFL
PGPLTLITKHNNPRFSQKTLGFRIVEHPIVKQIIQEVGPLLATSANVSGFPSAVSSDEVKQDFPEKDILVISGTCSIGLE
STVVDAEERIIYREGVVSAAEIEDVLQAKCTCSPRSQSFRESIRIYVVKNHVDLSSFLSAKLAFKGVICQHPQPCTFYSV
LRQALRSSTQEVIFVYDEKNTEYPVLSRFLGASYDSGYAL
>Mature_280_residues
MLSQHIERIRSGQVFAFPTDTVYGLGVSFLIPEADKQLFALKRRNPQKALSVYVSSLEELEYVAQRRLGEASIKIAQKFL
PGPLTLITKHNNPRFSQKTLGFRIVEHPIVKQIIQEVGPLLATSANVSGFPSAVSSDEVKQDFPEKDILVISGTCSIGLE
STVVDAEERIIYREGVVSAAEIEDVLQAKCTCSPRSQSFRESIRIYVVKNHVDLSSFLSAKLAFKGVICQHPQPCTFYSV
LRQALRSSTQEVIFVYDEKNTEYPVLSRFLGASYDSGYAL

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=178, Percent_Identity=31.4606741573034, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI2367210, Length=181, Percent_Identity=28.7292817679558, Blast_Score=69, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17537239, Length=188, Percent_Identity=31.9148936170213, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321269, Length=178, Percent_Identity=30.8988764044944, Blast_Score=70, Evalue=5e-13,
Organism=Drosophila melanogaster, GI78707274, Length=169, Percent_Identity=32.5443786982249, Blast_Score=75, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 31197; Mature: 31197

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSQHIERIRSGQVFAFPTDTVYGLGVSFLIPEADKQLFALKRRNPQKALSVYVSSLEEL
CCHHHHHHHHCCCEEEECCCCHHHCCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
EYVAQRRLGEASIKIAQKFLPGPLTLITKHNNPRFSQKTLGFRIVEHPIVKQIIQEVGPL
HHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCHH
LATSANVSGFPSAVSSDEVKQDFPEKDILVISGTCSIGLESTVVDAEERIIYREGVVSAA
HCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHEECHHHHHHHHHCCCCHH
EIEDVLQAKCTCSPRSQSFRESIRIYVVKNHVDLSSFLSAKLAFKGVICQHPQPCTFYSV
HHHHHHHHHCCCCCCHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHH
LRQALRSSTQEVIFVYDEKNTEYPVLSRFLGASYDSGYAL
HHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLSQHIERIRSGQVFAFPTDTVYGLGVSFLIPEADKQLFALKRRNPQKALSVYVSSLEEL
CCHHHHHHHHCCCEEEECCCCHHHCCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
EYVAQRRLGEASIKIAQKFLPGPLTLITKHNNPRFSQKTLGFRIVEHPIVKQIIQEVGPL
HHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCHH
LATSANVSGFPSAVSSDEVKQDFPEKDILVISGTCSIGLESTVVDAEERIIYREGVVSAA
HCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHEECHHHHHHHHHCCCCHH
EIEDVLQAKCTCSPRSQSFRESIRIYVVKNHVDLSSFLSAKLAFKGVICQHPQPCTFYSV
HHHHHHHHHCCCCCCHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHH
LRQALRSSTQEVIFVYDEKNTEYPVLSRFLGASYDSGYAL
HHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA