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Identifier: 15834951

GI number: 15834951

Start: 392141

End: 392902

Strand: Direct

Name: Not Available

Synonym: TC0331

Alternate gene names: 15834951

Gene position: 392141-392902 (Clockwise)

Preceding gene: 15834950

Following gene: 15834952

Centisome position: 36.55

GC content: 42.78

Gene sequence:

>762_bases
GTGAAGACTCAAGATCTTGCGGATACTTGGCAGTTGTACTGGTCAACTAAGGAAATCCATCACAGGGATTTTTTGATCGA
GGCCTATCTCCCTCTTGTGAAAAATGTGGCGCATCGACTTGCTTCAGGCATGCCTTCTCATGTGAAGATAGAAGATCTTT
ATGCTTCTGGGGTTGAGGGATTAGTTCGGGCTGTTGAGCGTTTTGATCCAGAAAAAAGTAAGCGATTCGAGAGCTACGCT
CTTTTTATTATAAAAGCGGCGATTATTGATGATTTGCGCAAGCAGGACTGGGTTCCTAGAAGTGTCTATCAAAGAGCAAA
TCGCTTGGCTGATGCAATGGACGCCTTGAGACAAACTTTAGGGAAAGAGCCTACAGATGGAGATCTTTGTGAGTATTTAA
ATATTTCACAACAGGAGTTATCGCACTGGTTCTCTTCCTCTAGACCAGCTCTAGTTCTTTCGTTGAATGATGATTTTTCT
TGCCAAGATGAGGACGAAGGTCTTGCTTTAGAAGAAAGAATAGCGGATGAGCGGGCTGAAAATGGATACGATGTCATTAG
GAAAAAGGAAGCTATTTCTATCTTAACGGAGGCCCTGCTTTCCCTTGATGAGAAAGAGCGGCAGGTAATGGCCTTGTATT
ACTATGATGATTTAGTTCTTAAAGAAATAGGAAAGATTTTGGGGGTTAGCGAGTCTCGAGTTTCCCAAATTCATTCTAAA
GCCCTACTCAAGTTGCGGGGCACATTGTCGAGCCTTTTATAA

Upstream 100 bases:

>100_bases
GTTTGTTGGGAGTTATTTGTTACTTGTGAAAATGTAGACATTGTTTAAAATTTTTATTTGATTTAATCTTATTTTTTTAG
TCTGTGAAAGAATTATTTTT

Downstream 100 bases:

>100_bases
AGGCCGTCTCTAGATCAGAATTTTCGTATTTTCTATCAATGTTTTGTTAGATATATTGACCTATTTTGTTAGCAGTATAT
CTGGAACAGCTTGCCTTGCT

Product: RNA polymerase sigma factor sigma-28

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MKTQDLADTWQLYWSTKEIHHRDFLIEAYLPLVKNVAHRLASGMPSHVKIEDLYASGVEGLVRAVERFDPEKSKRFESYA
LFIIKAAIIDDLRKQDWVPRSVYQRANRLADAMDALRQTLGKEPTDGDLCEYLNISQQELSHWFSSSRPALVLSLNDDFS
CQDEDEGLALEERIADERAENGYDVIRKKEAISILTEALLSLDEKERQVMALYYYDDLVLKEIGKILGVSESRVSQIHSK
ALLKLRGTLSSLL

Sequences:

>Translated_253_residues
MKTQDLADTWQLYWSTKEIHHRDFLIEAYLPLVKNVAHRLASGMPSHVKIEDLYASGVEGLVRAVERFDPEKSKRFESYA
LFIIKAAIIDDLRKQDWVPRSVYQRANRLADAMDALRQTLGKEPTDGDLCEYLNISQQELSHWFSSSRPALVLSLNDDFS
CQDEDEGLALEERIADERAENGYDVIRKKEAISILTEALLSLDEKERQVMALYYYDDLVLKEIGKILGVSESRVSQIHSK
ALLKLRGTLSSLL
>Mature_253_residues
MKTQDLADTWQLYWSTKEIHHRDFLIEAYLPLVKNVAHRLASGMPSHVKIEDLYASGVEGLVRAVERFDPEKSKRFESYA
LFIIKAAIIDDLRKQDWVPRSVYQRANRLADAMDALRQTLGKEPTDGDLCEYLNISQQELSHWFSSSRPALVLSLNDDFS
CQDEDEGLALEERIADERAENGYDVIRKKEAISILTEALLSLDEKERQVMALYYYDDLVLKEIGKILGVSESRVSQIHSK
ALLKLRGTLSSLL

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=242, Percent_Identity=35.5371900826446, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI1789098, Length=245, Percent_Identity=27.3469387755102, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789448, Length=229, Percent_Identity=25.3275109170306, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 28962; Mature: 28962

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTQDLADTWQLYWSTKEIHHRDFLIEAYLPLVKNVAHRLASGMPSHVKIEDLYASGVEG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHH
LVRAVERFDPEKSKRFESYALFIIKAAIIDDLRKQDWVPRSVYQRANRLADAMDALRQTL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
GKEPTDGDLCEYLNISQQELSHWFSSSRPALVLSLNDDFSCQDEDEGLALEERIADERAE
CCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHC
NGYDVIRKKEAISILTEALLSLDEKERQVMALYYYDDLVLKEIGKILGVSESRVSQIHSK
CCHHHHHHHHHHHHHHHHHHHCCHHHHHEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ALLKLRGTLSSLL
HHHHHHHHHHHHC
>Mature Secondary Structure
MKTQDLADTWQLYWSTKEIHHRDFLIEAYLPLVKNVAHRLASGMPSHVKIEDLYASGVEG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHH
LVRAVERFDPEKSKRFESYALFIIKAAIIDDLRKQDWVPRSVYQRANRLADAMDALRQTL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
GKEPTDGDLCEYLNISQQELSHWFSSSRPALVLSLNDDFSCQDEDEGLALEERIADERAE
CCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHC
NGYDVIRKKEAISILTEALLSLDEKERQVMALYYYDDLVLKEIGKILGVSESRVSQIHSK
CCHHHHHHHHHHHHHHHHHHHCCHHHHHEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ALLKLRGTLSSLL
HHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]