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The map label for this gene is psd

Identifier: 15834697

GI number: 15834697

Start: 81897

End: 82802

Strand: Direct

Name: psd

Synonym: TC0072

Alternate gene names: 15834697

Gene position: 81897-82802 (Clockwise)

Preceding gene: 15834693

Following gene: 15834698

Centisome position: 7.63

GC content: 41.06

Gene sequence:

>906_bases
ATGGAATCGCAAGAATTTTTATATGTGAATCGCGAAACAGGTGCTGTGGAAAAAGAGCCAGTCTGTTGTTCTTTTGCGAT
TAAGTTTTTTCTTGAAACCCGATTAGGGAGGGGGGTGTATTCTTTTTTATGTAAGAATAGCTTGTTTTCTCGAATCGTGG
GCAGGTTTCAACGACTGCGAATGACAAGGCGCTTTATTAGGCCTTTTGTTGAAAAATATCGTATTTGCGAAGACGAGGCA
TTACGTCCCCTTTGTGATTTCACATCTTTTAACGATTTTTTTATACGGAAACTTAAGCCAGAAGCTCGGCCTATTTGTGG
AGGGAGTGAAATATGTGTCACTCCTGCGGACGGTGCCTATCTGGTGTTTCCTTCTATAAAGGATGTTTCTTTGTTTTCTG
TTAAAAACCAACTTTTTTCTTTGAACTCTTTGTTAGAAGATCAGCAATTAGCTTCCGAATATGCAGAAGGAAGTATGGCT
ATTGCTAGGTTGGCACCTTTTGATTACCACCGATTTCATTTTCCAGTGGAAGGTATTGCAGGTACCCCCAGACTGATTAA
TGGGTATCTCTTTTCCGTTCACCCGCTGATGCTTAAAAGGAATTTAAAAGTGTTCGCCGAAAATAAGCGGGAGATAACCG
TTATAGAGTCTAAGGAGTTTGGCAAAGTTGTCTATATAGAAATAGGGGCTTTAAATGTCGGCTCCATCCATCAAACTTTT
GCTCCTGGTAGCTATGTAGGGAAGGGAGCAGAAAAAGGTTTCTTTGCTTTTGGGGGATCGACAGTTGTGTTGTTGTTTGA
GCCTCAGCGTATTATTTTTGATGCGGACTTGGTGCACCATTCTGCCCAAGGCTTAGAAACTCGATGTCGAATGGGACAAT
CTTTAGGAAAACGTTTCTCTTCATAA

Upstream 100 bases:

>100_bases
ATTTTTGAGAAAGGGGAACTTCTTTATAGTTCCTTGTGTTTCGCATGTAGCAGACCTTCGCGAGAAGAGCAAAGTATCCC
CGCTAGGGTAGGAGAGAAAC

Downstream 100 bases:

>100_bases
AAATAAAGACTTAAAACGTTTTTTTTGATATTGCAAGAGAGAGAAAACTCAGAAGTTGCGCATTATGTGGCTAATCGTAG
CGTGGACACTCTTGGCTTGC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MESQEFLYVNRETGAVEKEPVCCSFAIKFFLETRLGRGVYSFLCKNSLFSRIVGRFQRLRMTRRFIRPFVEKYRICEDEA
LRPLCDFTSFNDFFIRKLKPEARPICGGSEICVTPADGAYLVFPSIKDVSLFSVKNQLFSLNSLLEDQQLASEYAEGSMA
IARLAPFDYHRFHFPVEGIAGTPRLINGYLFSVHPLMLKRNLKVFAENKREITVIESKEFGKVVYIEIGALNVGSIHQTF
APGSYVGKGAEKGFFAFGGSTVVLLFEPQRIIFDADLVHHSAQGLETRCRMGQSLGKRFSS

Sequences:

>Translated_301_residues
MESQEFLYVNRETGAVEKEPVCCSFAIKFFLETRLGRGVYSFLCKNSLFSRIVGRFQRLRMTRRFIRPFVEKYRICEDEA
LRPLCDFTSFNDFFIRKLKPEARPICGGSEICVTPADGAYLVFPSIKDVSLFSVKNQLFSLNSLLEDQQLASEYAEGSMA
IARLAPFDYHRFHFPVEGIAGTPRLINGYLFSVHPLMLKRNLKVFAENKREITVIESKEFGKVVYIEIGALNVGSIHQTF
APGSYVGKGAEKGFFAFGGSTVVLLFEPQRIIFDADLVHHSAQGLETRCRMGQSLGKRFSS
>Mature_301_residues
MESQEFLYVNRETGAVEKEPVCCSFAIKFFLETRLGRGVYSFLCKNSLFSRIVGRFQRLRMTRRFIRPFVEKYRICEDEA
LRPLCDFTSFNDFFIRKLKPEARPICGGSEICVTPADGAYLVFPSIKDVSLFSVKNQLFSLNSLLEDQQLASEYAEGSMA
IARLAPFDYHRFHFPVEGIAGTPRLINGYLFSVHPLMLKRNLKVFAENKREITVIESKEFGKVVYIEIGALNVGSIHQTF
APGSYVGKGAEKGFFAFGGSTVVLLFEPQRIIFDADLVHHSAQGLETRCRMGQSLGKRFSS

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=300, Percent_Identity=29, Blast_Score=95, Evalue=7e-20,
Organism=Escherichia coli, GI1790604, Length=257, Percent_Identity=31.1284046692607, Blast_Score=107, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI71980840, Length=193, Percent_Identity=30.0518134715026, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71980843, Length=170, Percent_Identity=32.3529411764706, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6321609, Length=306, Percent_Identity=34.9673202614379, Blast_Score=170, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_CHLMU (Q9PLM7)

Other databases:

- EMBL:   AE002160
- PIR:   D81745
- RefSeq:   NP_296456.1
- GeneID:   1245601
- GenomeReviews:   AE002160_GR
- KEGG:   cmu:TC0072
- TIGR:   TC_0072
- HOGENOM:   HBG302256
- OMA:   TVNPIAF
- PhylomeDB:   Q9PLM7
- ProtClustDB:   PRK00723
- BioCyc:   CMUR243161:TC_0072-MONOMER
- BRENDA:   4.1.1.65
- HAMAP:   MF_00663
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 34114; Mature: 34114

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESQEFLYVNRETGAVEKEPVCCSFAIKFFLETRLGRGVYSFLCKNSLFSRIVGRFQRLR
CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
MTRRFIRPFVEKYRICEDEALRPLCDFTSFNDFFIRKLKPEARPICGGSEICVTPADGAY
HHHHHHHHHHHHHHCCCHHHCCHHHCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCCCCE
LVFPSIKDVSLFSVKNQLFSLNSLLEDQQLASEYAEGSMAIARLAPFDYHRFHFPVEGIA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCEEECCCCCCC
GTPRLINGYLFSVHPLMLKRNLKVFAENKREITVIESKEFGKVVYIEIGALNVGSIHQTF
CCCHHHCCCHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCCEEEEEECCCCCCCCHHHC
APGSYVGKGAEKGFFAFGGSTVVLLFEPQRIIFDADLVHHSAQGLETRCRMGQSLGKRFS
CCCCCCCCCCCCCEEEECCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCC
S
C
>Mature Secondary Structure
MESQEFLYVNRETGAVEKEPVCCSFAIKFFLETRLGRGVYSFLCKNSLFSRIVGRFQRLR
CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
MTRRFIRPFVEKYRICEDEALRPLCDFTSFNDFFIRKLKPEARPICGGSEICVTPADGAY
HHHHHHHHHHHHHHCCCHHHCCHHHCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCCCCE
LVFPSIKDVSLFSVKNQLFSLNSLLEDQQLASEYAEGSMAIARLAPFDYHRFHFPVEGIA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCEEECCCCCCC
GTPRLINGYLFSVHPLMLKRNLKVFAENKREITVIESKEFGKVVYIEIGALNVGSIHQTF
CCCHHHCCCHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCCEEEEEECCCCCCCCHHHC
APGSYVGKGAEKGFFAFGGSTVVLLFEPQRIIFDADLVHHSAQGLETRCRMGQSLGKRFS
CCCCCCCCCCCCCEEEECCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10684935