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The map label for this gene is yciR [C]

Identifier: 158338942

GI number: 158338942

Start: 5923951

End: 5926302

Strand: Reverse

Name: yciR [C]

Synonym: AM1_5859

Alternate gene names: 158338942

Gene position: 5926302-5923951 (Counterclockwise)

Preceding gene: 158338943

Following gene: 158338941

Centisome position: 91.12

GC content: 47.28

Gene sequence:

>2352_bases
ATGAACGACTTTACGACGAACTCAATTGATAAACAGTCAGAATTATCAGAATTAGGCCAAAAAGCGCTTTCTGAATTTAC
TTTAACTGAGTTGTACTTAGAGGCGATCTCACTCATCAATCGCCATTTACCCATTGAAGATTGTTGTCTCTGGCAACTTC
TTTCAGATAGCAACACATTAAGACTATTAGCCAAACAAAAAGCGACCCTAGAAGGTAAATCTACCGATATCGATAGTCGT
GAATTGCCTTGGCTTCAATCTGTTCTCAAATCGGGGAAAATAGCCGTTATAACCGGAAATTCTGAACAGCTACCGCTCAC
TCAGCCTCAACAGCGGCGAGGACTGTGTGTGCCGATTTCTGCTGCTAAACAGGCGCTAGGGATATTAGAAATTCTCACCC
CCAATCCTCATACTTGGCTAAAAGAAGACCTGAATTTTGTTCAATCTGTAGTGCAGATCTTAGCAACAGCTATTCAACGC
AAACGATCTGAATCCTTGTTGCAGACCCAAACACAAATTCTGGAGTATGTAGCAACGGGTAAAGGGCTGGATGACATCCT
AAATTGTATATGCACTTTAATTGAAGCCCAATCCAGGGGCACCGTCTGCTCAATTTTGCTCAAGGACCCCAGTAAACAAG
AATTACGCATGGGGGCTGGCCCGAGTCTGTCTTCCGAAGTCGCCATTGCCTTTGACCATTTACTGATCGCTGAGAACGTT
GGCTCTTGCGGAACGGCGGCCTTTCGGGGCGTGGCAGTGTATGTGGAAGACACCTTCAAGGATCCAGTCTGGGCGGATTT
CCGTGAGTTTGCCCGTCAGCATAATATCCGAGCCTGTTGGTCAATGCCATTCTTTTCCCAGTTGGGAGAGCTTTTAGGAA
CGTTTGCCCTGACCCACCAAGTCCCCTGTGCTCCCACGGACCACCATCTAAGCATCATTAAAACCGCAACTCATTTGGCC
AGTATTGCCCTGGAAGGGCATCGAACCGCGGAGCAATTAAAGCATAAGGCACTATTTGATGAATTGACGGGGCTCCCCAG
CCGAGATTACTTCATCGAGGAGCTGCAGTATAAGCTCCATCAGCTACAGCAACATCGGTTAGCAGAATATTCAGTGTCTT
ACGACCCCTGTCACTTTGCAGTGTTGTTTTTGGATGTTGATCATTTCAAGCTCGTTAATGACAGTTTGGGGCATAGTGTG
GGGGATCAGCTCCTCGTTGCCCTCGCCCGTCAGCTGTCCGAAAGCTTGCGTTCTCATGACTTACTGGCCCGCTTGGGGGG
AGATGAATTTGCTGTACTCCTGGATGGTGTAGACAATCACCAGGAAGCCCATGAGATTGTCCAACGCATCCAGCGTTCCT
TAGCGAAACCTCTACAGGTTGATCATCAAGAAGTCTTTACCTCCGTCAGTATTGGCATGACCCACTCATCTAATTCATAT
GAGCATACTGAGGAGCTGCTGCGGGATGCTGATACGGCCATGTATCAAGCAAAAGATCAGGGGCAGGGTGGCTATGTGGT
CTTTGATGAAGTGATGCATAAGCAGGTCCGTTCTCGGTTATGGCTGGGCAATAGTTTGCGATATGCCGTCAAAGCGTTGG
AGAAAGGACAGTGCCAATTCCAACTCCAGTACCAGCCCATTTTTTGTTTACAGCAACGAAAGTTGATCGGGTTTGAAGCC
CTGTTACGGTGGCATCATCCTCAGCAGGGGCTGATTTCGCCTGAGCAATTTATTCCAATTGCTGAAGAGACGGGACTGAT
TGTGCCATTGGGCCAGTGGGTTCTAGAACGGGCTTGCCAACAGCTCGCCATTTGGTTTGAAGAATTTTGGGCTCCCGTCT
CCATGAGTATTAATGTGTCGAGCCAGCAATTTTTGCAACCCGACTTTGTGTCCAGTATCCAATCCTTACTCAATGGCCAC
CAGCTCCCAGGAGAGCTACTCAAATTAGAGATTACAGAAAGCGTGTTGATGGAAACCACACATCACGTAACGGACCGGCT
GGAGCAACTGCAAAAACTAGGACTATTGCTGAGTTTGGATGATTTTGGCACGGGGTATTCATCCTTGAACTACCTTCACA
ATTTACCGATCAATACCTTAAAGATTGACCGCTCCTTTGTATGGGGGATTGGCCAGGGTCAAGATCAGATAGTGAAAACG
ATAATTGCTCTTGCCCATGGTTTAGAGATGAACGTTGTGGCAGAAGGGATTGAGACCGTGGAGCAGGCCCAGTATCTAAA
TCTGCTAGGGTGCGAACTCGGACAAGGTTTTTGGTTTGCTCGTCCCTTAGAGCCTGATGATGCAAAAAAATGGCTTTTAA
CGTTGAAGAACCATAGAAAATTATTGACCTAG

Upstream 100 bases:

>100_bases
GACATGGCTTGTCAGAAAAATGGTCGGTTTGCCTTTGAAAATCCATGTAATGAAATGACTTATTCAACACAGTATCTTAA
ATATTTACGTCTTTGGCCTC

Downstream 100 bases:

>100_bases
CGGAGTATTGCATGTCCTTACCGTTTTCCCCACAATCCTCCTTGCACCAACGTCTCAGGGTTGGGCTAGGAACTATGCTG
GTGCCCCTGATTATGCTGGC

Product: PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 783; Mature: 783

Protein sequence:

>783_residues
MNDFTTNSIDKQSELSELGQKALSEFTLTELYLEAISLINRHLPIEDCCLWQLLSDSNTLRLLAKQKATLEGKSTDIDSR
ELPWLQSVLKSGKIAVITGNSEQLPLTQPQQRRGLCVPISAAKQALGILEILTPNPHTWLKEDLNFVQSVVQILATAIQR
KRSESLLQTQTQILEYVATGKGLDDILNCICTLIEAQSRGTVCSILLKDPSKQELRMGAGPSLSSEVAIAFDHLLIAENV
GSCGTAAFRGVAVYVEDTFKDPVWADFREFARQHNIRACWSMPFFSQLGELLGTFALTHQVPCAPTDHHLSIIKTATHLA
SIALEGHRTAEQLKHKALFDELTGLPSRDYFIEELQYKLHQLQQHRLAEYSVSYDPCHFAVLFLDVDHFKLVNDSLGHSV
GDQLLVALARQLSESLRSHDLLARLGGDEFAVLLDGVDNHQEAHEIVQRIQRSLAKPLQVDHQEVFTSVSIGMTHSSNSY
EHTEELLRDADTAMYQAKDQGQGGYVVFDEVMHKQVRSRLWLGNSLRYAVKALEKGQCQFQLQYQPIFCLQQRKLIGFEA
LLRWHHPQQGLISPEQFIPIAEETGLIVPLGQWVLERACQQLAIWFEEFWAPVSMSINVSSQQFLQPDFVSSIQSLLNGH
QLPGELLKLEITESVLMETTHHVTDRLEQLQKLGLLLSLDDFGTGYSSLNYLHNLPINTLKIDRSFVWGIGQGQDQIVKT
IIALAHGLEMNVVAEGIETVEQAQYLNLLGCELGQGFWFARPLEPDDAKKWLLTLKNHRKLLT

Sequences:

>Translated_783_residues
MNDFTTNSIDKQSELSELGQKALSEFTLTELYLEAISLINRHLPIEDCCLWQLLSDSNTLRLLAKQKATLEGKSTDIDSR
ELPWLQSVLKSGKIAVITGNSEQLPLTQPQQRRGLCVPISAAKQALGILEILTPNPHTWLKEDLNFVQSVVQILATAIQR
KRSESLLQTQTQILEYVATGKGLDDILNCICTLIEAQSRGTVCSILLKDPSKQELRMGAGPSLSSEVAIAFDHLLIAENV
GSCGTAAFRGVAVYVEDTFKDPVWADFREFARQHNIRACWSMPFFSQLGELLGTFALTHQVPCAPTDHHLSIIKTATHLA
SIALEGHRTAEQLKHKALFDELTGLPSRDYFIEELQYKLHQLQQHRLAEYSVSYDPCHFAVLFLDVDHFKLVNDSLGHSV
GDQLLVALARQLSESLRSHDLLARLGGDEFAVLLDGVDNHQEAHEIVQRIQRSLAKPLQVDHQEVFTSVSIGMTHSSNSY
EHTEELLRDADTAMYQAKDQGQGGYVVFDEVMHKQVRSRLWLGNSLRYAVKALEKGQCQFQLQYQPIFCLQQRKLIGFEA
LLRWHHPQQGLISPEQFIPIAEETGLIVPLGQWVLERACQQLAIWFEEFWAPVSMSINVSSQQFLQPDFVSSIQSLLNGH
QLPGELLKLEITESVLMETTHHVTDRLEQLQKLGLLLSLDDFGTGYSSLNYLHNLPINTLKIDRSFVWGIGQGQDQIVKT
IIALAHGLEMNVVAEGIETVEQAQYLNLLGCELGQGFWFARPLEPDDAKKWLLTLKNHRKLLT
>Mature_783_residues
MNDFTTNSIDKQSELSELGQKALSEFTLTELYLEAISLINRHLPIEDCCLWQLLSDSNTLRLLAKQKATLEGKSTDIDSR
ELPWLQSVLKSGKIAVITGNSEQLPLTQPQQRRGLCVPISAAKQALGILEILTPNPHTWLKEDLNFVQSVVQILATAIQR
KRSESLLQTQTQILEYVATGKGLDDILNCICTLIEAQSRGTVCSILLKDPSKQELRMGAGPSLSSEVAIAFDHLLIAENV
GSCGTAAFRGVAVYVEDTFKDPVWADFREFARQHNIRACWSMPFFSQLGELLGTFALTHQVPCAPTDHHLSIIKTATHLA
SIALEGHRTAEQLKHKALFDELTGLPSRDYFIEELQYKLHQLQQHRLAEYSVSYDPCHFAVLFLDVDHFKLVNDSLGHSV
GDQLLVALARQLSESLRSHDLLARLGGDEFAVLLDGVDNHQEAHEIVQRIQRSLAKPLQVDHQEVFTSVSIGMTHSSNSY
EHTEELLRDADTAMYQAKDQGQGGYVVFDEVMHKQVRSRLWLGNSLRYAVKALEKGQCQFQLQYQPIFCLQQRKLIGFEA
LLRWHHPQQGLISPEQFIPIAEETGLIVPLGQWVLERACQQLAIWFEEFWAPVSMSINVSSQQFLQPDFVSSIQSLLNGH
QLPGELLKLEITESVLMETTHHVTDRLEQLQKLGLLLSLDDFGTGYSSLNYLHNLPINTLKIDRSFVWGIGQGQDQIVKT
IIALAHGLEMNVVAEGIETVEQAQYLNLLGCELGQGFWFARPLEPDDAKKWLLTLKNHRKLLT

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=450, Percent_Identity=35.1111111111111, Blast_Score=259, Evalue=6e-70,
Organism=Escherichia coli, GI87081921, Length=511, Percent_Identity=30.5283757338552, Blast_Score=246, Evalue=4e-66,
Organism=Escherichia coli, GI226510982, Length=388, Percent_Identity=31.1855670103093, Blast_Score=171, Evalue=2e-43,
Organism=Escherichia coli, GI87081845, Length=233, Percent_Identity=36.480686695279, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI87081980, Length=263, Percent_Identity=36.8821292775665, Blast_Score=149, Evalue=9e-37,
Organism=Escherichia coli, GI1788502, Length=238, Percent_Identity=37.3949579831933, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1787055, Length=292, Percent_Identity=31.1643835616438, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1786507, Length=229, Percent_Identity=35.3711790393013, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=33.8775510204082, Blast_Score=136, Evalue=6e-33,
Organism=Escherichia coli, GI87081743, Length=232, Percent_Identity=33.6206896551724, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI1787262, Length=189, Percent_Identity=33.8624338624339, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI1788849, Length=260, Percent_Identity=33.0769230769231, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1786584, Length=189, Percent_Identity=31.7460317460317, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI87082096, Length=386, Percent_Identity=24.3523316062176, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1788381, Length=186, Percent_Identity=34.4086021505376, Blast_Score=91, Evalue=4e-19,
Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=35.7541899441341, Blast_Score=90, Evalue=6e-19,
Organism=Escherichia coli, GI1787802, Length=177, Percent_Identity=31.0734463276836, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1788956, Length=172, Percent_Identity=35.4651162790698, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI87082007, Length=176, Percent_Identity=34.0909090909091, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI145693134, Length=173, Percent_Identity=29.4797687861272, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787816, Length=177, Percent_Identity=29.9435028248588, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1788085, Length=183, Percent_Identity=28.4153005464481, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081977, Length=268, Percent_Identity=25.3731343283582, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI87081974, Length=145, Percent_Identity=32.4137931034483, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 88076; Mature: 88076

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDFTTNSIDKQSELSELGQKALSEFTLTELYLEAISLINRHLPIEDCCLWQLLSDSNTL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCE
RLLAKQKATLEGKSTDIDSRELPWLQSVLKSGKIAVITGNSEQLPLTQPQQRRGLCVPIS
EHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCHHHCCEEEEHH
AAKQALGILEILTPNPHTWLKEDLNFVQSVVQILATAIQRKRSESLLQTQTQILEYVATG
HHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KGLDDILNCICTLIEAQSRGTVCSILLKDPSKQELRMGAGPSLSSEVAIAFDHLLIAENV
CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHCC
GSCGTAAFRGVAVYVEDTFKDPVWADFREFARQHNIRACWSMPFFSQLGELLGTFALTHQ
CCCCHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHCC
VPCAPTDHHLSIIKTATHLASIALEGHRTAEQLKHKALFDELTGLPSRDYFIEELQYKLH
CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QLQQHRLAEYSVSYDPCHFAVLFLDVDHFKLVNDSLGHSVGDQLLVALARQLSESLRSHD
HHHHHHHHHHCCCCCCCEEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
LLARLGGDEFAVLLDGVDNHQEAHEIVQRIQRSLAKPLQVDHQEVFTSVSIGMTHSSNSY
HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHEEEECCCCCH
EHTEELLRDADTAMYQAKDQGQGGYVVFDEVMHKQVRSRLWLGNSLRYAVKALEKGQCQF
HHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEE
QLQYQPIFCLQQRKLIGFEALLRWHHPQQGLISPEQFIPIAEETGLIVPLGQWVLERACQ
EEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHCCCEEEHHHHHHHHHHH
QLAIWFEEFWAPVSMSINVSSQQFLQPDFVSSIQSLLNGHQLPGELLKLEITESVLMETT
HHHHHHHHHCCCCEEEEECCHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
HHVTDRLEQLQKLGLLLSLDDFGTGYSSLNYLHNLPINTLKIDRSFVWGIGQGQDQIVKT
HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCEEEECCCEEECCCCCHHHHHHH
IIALAHGLEMNVVAEGIETVEQAQYLNLLGCELGQGFWFARPLEPDDAKKWLLTLKNHRK
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCHH
LLT
CCC
>Mature Secondary Structure
MNDFTTNSIDKQSELSELGQKALSEFTLTELYLEAISLINRHLPIEDCCLWQLLSDSNTL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCE
RLLAKQKATLEGKSTDIDSRELPWLQSVLKSGKIAVITGNSEQLPLTQPQQRRGLCVPIS
EHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCHHHCCEEEEHH
AAKQALGILEILTPNPHTWLKEDLNFVQSVVQILATAIQRKRSESLLQTQTQILEYVATG
HHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KGLDDILNCICTLIEAQSRGTVCSILLKDPSKQELRMGAGPSLSSEVAIAFDHLLIAENV
CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHCC
GSCGTAAFRGVAVYVEDTFKDPVWADFREFARQHNIRACWSMPFFSQLGELLGTFALTHQ
CCCCHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHCC
VPCAPTDHHLSIIKTATHLASIALEGHRTAEQLKHKALFDELTGLPSRDYFIEELQYKLH
CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QLQQHRLAEYSVSYDPCHFAVLFLDVDHFKLVNDSLGHSVGDQLLVALARQLSESLRSHD
HHHHHHHHHHCCCCCCCEEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
LLARLGGDEFAVLLDGVDNHQEAHEIVQRIQRSLAKPLQVDHQEVFTSVSIGMTHSSNSY
HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHEEEECCCCCH
EHTEELLRDADTAMYQAKDQGQGGYVVFDEVMHKQVRSRLWLGNSLRYAVKALEKGQCQF
HHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEE
QLQYQPIFCLQQRKLIGFEALLRWHHPQQGLISPEQFIPIAEETGLIVPLGQWVLERACQ
EEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHCCCEEEHHHHHHHHHHH
QLAIWFEEFWAPVSMSINVSSQQFLQPDFVSSIQSLLNGHQLPGELLKLEITESVLMETT
HHHHHHHHHCCCCEEEEECCHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
HHVTDRLEQLQKLGLLLSLDDFGTGYSSLNYLHNLPINTLKIDRSFVWGIGQGQDQIVKT
HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCEEEECCCEEECCCCCHHHHHHH
IIALAHGLEMNVVAEGIETVEQAQYLNLLGCELGQGFWFARPLEPDDAKKWLLTLKNHRK
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCHH
LLT
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]