Click here to switch to the map view.

The map label for this gene is tnpA [H]

Identifier: 158338931

GI number: 158338931

Start: 5916051

End: 5917295

Strand: Direct

Name: tnpA [H]

Synonym: AM1_5848

Alternate gene names: 158338931

Gene position: 5916051-5917295 (Clockwise)

Preceding gene: 158338929

Following gene: 158338932

Centisome position: 90.96

GC content: 45.22

Gene sequence:

>1245_bases
ATGGATAACTCAATTCGCATCCCGCTCAACCTTCCTGATATTCGAGTTCTAGAGCTATCGAAGACTGAGAGAGGGGATTG
GCTCATCAAGATTGAGAGTACGCTTCAAGGAACAACCTGTCATCAATGCGGACGTGAGATTACTGACCTCCATTGTCATG
ATCAGCCTTTTCGGATTCGTCACCTGCCATTATTTGAAGTCCCCGTTTACTTAGAAATTCGGCCCAAGCGTTATCGATGC
AAGTATTGCGATGACCATCCCACAACAACTCAACATTTAGAATGGCACGAACCTCGCAGTCCCAATACAAAAGCATATGA
GCGTTGGCTTCTGCGAATCTTGATCAATTCAACGGTCTCAGATGTTGCCAGAAAACTAGGCGTTAGTGAGGATATCGTCA
GTGGAATCATTGATCGTTGGATTGCCGCTCAAGTTGACTGGAGCGAATATGCAGACCTCAAAGTTATGGGGATGGATGAG
ATTTCTCTCAAACGAGGCCATCGTGATTTTGTGGTTTTGATCACGATTCCTACGACGGATGGGGTGGATATATTGGCAGT
TCTAGCCGACCGTAAACAGCAGACAGTGGCAAATTTCCTTCAATCGATTCCCATTGATTTACGCCAAACCATTGAGCGCG
TCTGTACGGACATGTACCAAGGATTTGTCAGTGCAGTCCGAGAACAATTGCCGCAAGCCAAAATTGTCATTGACCGCTTT
CATGTGACCAAAGCCTATCGTAATTGTGCTGATACGGTTCGTAAACGTGAGGTCAAACGTCTACGACGAGAGCTCTCTAA
GCAAGAGTATGACAGCATCAAAGGCGCGATGTGGCCTTTTAGAAAACGACCAGAGAATCTGAAAGAGTCAGAGCAACAAC
TCCTTGAGCGATTGTTTGCTTATTCTCCACAACTGAAACAGGCGTACAACCTCCGAGAGAAACTCACGCAGATATTTGAG
GGCAGGTACACCAAGCACGGAGCTAAATGTGCCATCCGTGCTTGGTGTAAACAAGTACTCAAGAGTGACATCAAGGAATT
CGATTGTTTTCTGACCACTATCAATAATTGGATGGACGAGATGACCAACTATTTCCTGGAGGGGTGGACCAGTGGTTTTG
TGGAAGGATTTAATAACCGAGTCAAAGTCTTAAAAAGACGATGCTACGGTATTTTCGATATTGAAAGACTCTTCCAAAGG
ATTTCTCTTGACCTCAATGGGTATCAGACATTCGCTGTGACCTAA

Upstream 100 bases:

>100_bases
AGGCTCTCTGGGAATTAGCGTGTAGCAGTCCTACATTTAGTGTGTTTCCTTTTTCATCCCTATGGAATGATCTGAGGTAG
TACTTCAGAGCAATGGCGTA

Downstream 100 bases:

>100_bases
ACACTATATCTAGCGGCTACCACGCTAATTCCCGGAGAGCCGAAAAAAAGTAGCGATCCCAAAAGCTCGGTATCCAAAGC
AGACTGGATCTTTGAGACGA

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MDNSIRIPLNLPDIRVLELSKTERGDWLIKIESTLQGTTCHQCGREITDLHCHDQPFRIRHLPLFEVPVYLEIRPKRYRC
KYCDDHPTTTQHLEWHEPRSPNTKAYERWLLRILINSTVSDVARKLGVSEDIVSGIIDRWIAAQVDWSEYADLKVMGMDE
ISLKRGHRDFVVLITIPTTDGVDILAVLADRKQQTVANFLQSIPIDLRQTIERVCTDMYQGFVSAVREQLPQAKIVIDRF
HVTKAYRNCADTVRKREVKRLRRELSKQEYDSIKGAMWPFRKRPENLKESEQQLLERLFAYSPQLKQAYNLREKLTQIFE
GRYTKHGAKCAIRAWCKQVLKSDIKEFDCFLTTINNWMDEMTNYFLEGWTSGFVEGFNNRVKVLKRRCYGIFDIERLFQR
ISLDLNGYQTFAVT

Sequences:

>Translated_414_residues
MDNSIRIPLNLPDIRVLELSKTERGDWLIKIESTLQGTTCHQCGREITDLHCHDQPFRIRHLPLFEVPVYLEIRPKRYRC
KYCDDHPTTTQHLEWHEPRSPNTKAYERWLLRILINSTVSDVARKLGVSEDIVSGIIDRWIAAQVDWSEYADLKVMGMDE
ISLKRGHRDFVVLITIPTTDGVDILAVLADRKQQTVANFLQSIPIDLRQTIERVCTDMYQGFVSAVREQLPQAKIVIDRF
HVTKAYRNCADTVRKREVKRLRRELSKQEYDSIKGAMWPFRKRPENLKESEQQLLERLFAYSPQLKQAYNLREKLTQIFE
GRYTKHGAKCAIRAWCKQVLKSDIKEFDCFLTTINNWMDEMTNYFLEGWTSGFVEGFNNRVKVLKRRCYGIFDIERLFQR
ISLDLNGYQTFAVT
>Mature_414_residues
MDNSIRIPLNLPDIRVLELSKTERGDWLIKIESTLQGTTCHQCGREITDLHCHDQPFRIRHLPLFEVPVYLEIRPKRYRC
KYCDDHPTTTQHLEWHEPRSPNTKAYERWLLRILINSTVSDVARKLGVSEDIVSGIIDRWIAAQVDWSEYADLKVMGMDE
ISLKRGHRDFVVLITIPTTDGVDILAVLADRKQQTVANFLQSIPIDLRQTIERVCTDMYQGFVSAVREQLPQAKIVIDRF
HVTKAYRNCADTVRKREVKRLRRELSKQEYDSIKGAMWPFRKRPENLKESEQQLLERLFAYSPQLKQAYNLREKLTQIFE
GRYTKHGAKCAIRAWCKQVLKSDIKEFDCFLTTINNWMDEMTNYFLEGWTSGFVEGFNNRVKVLKRRCYGIFDIERLFQR
ISLDLNGYQTFAVT

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3464

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 12 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002560 [H]

Pfam domain/function: PF01610 Transposase_12 [H]

EC number: NA

Molecular weight: Translated: 48743; Mature: 48743

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNSIRIPLNLPDIRVLELSKTERGDWLIKIESTLQGTTCHQCGREITDLHCHDQPFRIR
CCCCEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHCCHHHHCCCCCCCCEEE
HLPLFEVPVYLEIRPKRYRCKYCDDHPTTTQHLEWHEPRSPNTKAYERWLLRILINSTVS
CCCEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
DVARKLGVSEDIVSGIIDRWIAAQVDWSEYADLKVMGMDEISLKRGHRDFVVLITIPTTD
HHHHHCCCCHHHHHHHHHHHHHCCCCHHHCCCEEEECCCHHHHHCCCCCEEEEEEECCCC
GVDILAVLADRKQQTVANFLQSIPIDLRQTIERVCTDMYQGFVSAVREQLPQAKIVIDRF
CHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HVTKAYRNCADTVRKREVKRLRRELSKQEYDSIKGAMWPFRKRPENLKESEQQLLERLFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
YSPQLKQAYNLREKLTQIFEGRYTKHGAKCAIRAWCKQVLKSDIKEFDCFLTTINNWMDE
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTNYFLEGWTSGFVEGFNNRVKVLKRRCYGIFDIERLFQRISLDLNGYQTFAVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEC
>Mature Secondary Structure
MDNSIRIPLNLPDIRVLELSKTERGDWLIKIESTLQGTTCHQCGREITDLHCHDQPFRIR
CCCCEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHCCHHHHCCCCCCCCEEE
HLPLFEVPVYLEIRPKRYRCKYCDDHPTTTQHLEWHEPRSPNTKAYERWLLRILINSTVS
CCCEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
DVARKLGVSEDIVSGIIDRWIAAQVDWSEYADLKVMGMDEISLKRGHRDFVVLITIPTTD
HHHHHCCCCHHHHHHHHHHHHHCCCCHHHCCCEEEECCCHHHHHCCCCCEEEEEEECCCC
GVDILAVLADRKQQTVANFLQSIPIDLRQTIERVCTDMYQGFVSAVREQLPQAKIVIDRF
CHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HVTKAYRNCADTVRKREVKRLRRELSKQEYDSIKGAMWPFRKRPENLKESEQQLLERLFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
YSPQLKQAYNLREKLTQIFEGRYTKHGAKCAIRAWCKQVLKSDIKEFDCFLTTINNWMDE
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTNYFLEGWTSGFVEGFNNRVKVLKRRCYGIFDIERLFQRISLDLNGYQTFAVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8093238 [H]