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The map label for this gene is apcA

Identifier: 158338896

GI number: 158338896

Start: 5891043

End: 5891510

Strand: Reverse

Name: apcA

Synonym: AM1_5810

Alternate gene names: NA

Gene position: 5891510-5891043 (Counterclockwise)

Preceding gene: 158338897

Following gene: 158338894

Centisome position: 90.59

GC content: 47.86

Gene sequence:

>468_bases
ATGTTGTCACAACTAAAGCGCATTAGCCTTGAGGCCGATGGACGGTATGCCACTGATGCCGAGTTAGCTTGCGTAAAGTC
TTATCTTCAAGACGTTGGCCAGCGCATCAGTGGCTATGAAAAGATTCGGGATGCTGAAGACGCCATTATGGACGACTCTG
AGGTTCAACTAACGGATATTGAACCGCAAGTGTTTTGTAAAGGCCCCAAAGACTACTCAGAAACCTGTCGTCGGGATCGG
AAAAATACCTTGCGGTATGCCGCAACCGCCATGCTCTTTAATGACCTGGATCGACTCAGGGATGGACTTCTCCTGTGGCA
GCGCACTATTGTTCGAGCCGTCAAGGATGAACAGGCCTCTACATTAACTTGGAGGGAGATGCCAGAGGTTTTAAGAGGGC
ATCTTTCCGCTGAAGAAACAGATTTGATGATGCCAGCACTTCATCTAAATCAGGCTTTATTAAGCTAA

Upstream 100 bases:

>100_bases
CCCGCTCCATGATTAGCCAATTGGAGGTGACTCGTAGTGATGTGGTCACCCATTTAGCCCATTCAAAACTTGTTTAATCC
AGATCAATATTGGGGGAATT

Downstream 100 bases:

>100_bases
TTCGTAATCAAATTTTTATCAAATAATTTTTAAGGGTATCTCAATTATGCAGTCGCCAAAAGAAACGAACGGAAGAACAA
AAACATCTCACTGGCTTGAT

Product: allophycocyanin alpha subunit ApcA

Products: NA

Alternate protein names: Allophycocyanin Alpha Subunit ApcA; Allophycocyanin Alpha Subunit; Allophycocyanin Beta-18 Subunit

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MLSQLKRISLEADGRYATDAELACVKSYLQDVGQRISGYEKIRDAEDAIMDDSEVQLTDIEPQVFCKGPKDYSETCRRDR
KNTLRYAATAMLFNDLDRLRDGLLLWQRTIVRAVKDEQASTLTWREMPEVLRGHLSAEETDLMMPALHLNQALLS

Sequences:

>Translated_155_residues
MLSQLKRISLEADGRYATDAELACVKSYLQDVGQRISGYEKIRDAEDAIMDDSEVQLTDIEPQVFCKGPKDYSETCRRDR
KNTLRYAATAMLFNDLDRLRDGLLLWQRTIVRAVKDEQASTLTWREMPEVLRGHLSAEETDLMMPALHLNQALLS
>Mature_155_residues
MLSQLKRISLEADGRYATDAELACVKSYLQDVGQRISGYEKIRDAEDAIMDDSEVQLTDIEPQVFCKGPKDYSETCRRDR
KNTLRYAATAMLFNDLDRLRDGLLLWQRTIVRAVKDEQASTLTWREMPEVLRGHLSAEETDLMMPALHLNQALLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17767; Mature: 17767

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSQLKRISLEADGRYATDAELACVKSYLQDVGQRISGYEKIRDAEDAIMDDSEVQLTDI
CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
EPQVFCKGPKDYSETCRRDRKNTLRYAATAMLFNDLDRLRDGLLLWQRTIVRAVKDEQAS
CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTWREMPEVLRGHLSAEETDLMMPALHLNQALLS
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSQLKRISLEADGRYATDAELACVKSYLQDVGQRISGYEKIRDAEDAIMDDSEVQLTDI
CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
EPQVFCKGPKDYSETCRRDRKNTLRYAATAMLFNDLDRLRDGLLLWQRTIVRAVKDEQAS
CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTWREMPEVLRGHLSAEETDLMMPALHLNQALLS
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA