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The map label for this gene is 158338785

Identifier: 158338785

GI number: 158338785

Start: 5764969

End: 5766429

Strand: Reverse

Name: 158338785

Synonym: AM1_5696

Alternate gene names: NA

Gene position: 5766429-5764969 (Counterclockwise)

Preceding gene: 158338787

Following gene: 158338783

Centisome position: 88.66

GC content: 48.12

Gene sequence:

>1461_bases
ATGGAGTCAACCCTCATTTACCCTCATCAGTTATATGAATCTCATCCTGCCGTCTCACCAGAGCGTATTTCCTTCTTAAT
CGAAGAGCCCCTTTTTTTTCGCCAATATCCCTTTCACCAAAAGAAGATTATCCTACATCGAGCTTCGATGAAAAGCTATG
GCGATCGCTTGCAAACCCAAGGGATAACTGCCCAATACTTAGAAAGTCATGACCTTGAATCTTCGTCCACCGTTTTCGCC
ATTCTCAAGAGCCAGGGCATTCGCTGTGCCCATATTTGCGAAGTAACCGATGACTGGTTAGAGCAACGGATTAATAAAGC
AGCACTGACCTTCGACATCCAGCTGTATTGGTATCCAACCCCTAACTTCCTCACCCAAACCTCCGCATTAGAATCCCTTT
TGCCTACCAACAAATCCTTACGGATGAATTCCTTCTATATCAAACAGCGCCAGCGATTAGGGATTCTCCTGGACGGGGAG
GGACCCGTAGGAGGCAAATGGAGCTACGATGCGGACAATCGGAAGCGCTTACCTCAAAAAATTGAGCTTCCTCGTATCCA
GTGGCCTGCAGCCAATACCTATGTCAAAGAGGCCGTTATCTACACCCAGCAACACTTTGCCAGTAATCCAGGTAGTAGCC
ACGGTTTTGTCTATCCGATTGATCACGACAGTGCCGTGCAATTCCTTTATCAATTCCTAGAAACCCGCATTGACCAGTAT
GGTGCCTACCAAGATGCCATCGATACAAACCAATCCTACTTATTCCACTCCGTGTTGACGCCTGCACTGAACATTGGTTT
ATTGCATCCAGAAGAAATCGTCCAAGCCACCTTAGACCGGCATGCAGAGCGCCCCATTCCTCTCAACTCCTTGGAGGGGT
TTATTCGTCAGGTAATTGGTTGGCGGGAATATGTCCGAGGTGTCTACCTGCTAAAAGGACGAACCCAAAGAACCACTAAT
TTTTTCCAGCACCAACGGCCTATCCCTGAAGATTTTTGGGACGCCAACACCGATATCCTGCCTTTTGATTCGGCCATGGC
ACGGGTGCTGGACAATAGCTATGCCAACCATATTGAACGACTCATGGTGTTTAGCAACCTATTCTTGCTCTGCGAATTCG
ATCCAGATCAGGTTTATCGGTGGTTTTCATCGTTGTTTATCGATGCATTTGACTGGGTGATGGTCCCAAATGTGTATGGC
ATGGGCCAGTATGCCGACGGGGGCCTAATGATTACTAAACCCTATGTCAGTTCTTCCAACTACCTGCGCAAGATGAGTTA
CTTCAAGCCAGGAGACTGGAGCACCCTTTGGGACGGTTTGTATTGGCGGTTTATGCACAAGCATCGATCATTATTTGAGC
GCAATCCTCGCACGCGGATGACCGTCAGCCATCTCGATCGCATGGGCGACAAGCTAGACCAGCATTTGCAGGTATCTGCA
GCCTTTCTTGACGGCTTTTAG

Upstream 100 bases:

>100_bases
CCAGGTGACCTCAACTCATCGCCTACCCCTTCATTTCCTAAGCAGTCCTGATAAGAGTTTGTATGATAGGGAACTGTTGC
CAAAACAGAAGAGAAGACTC

Downstream 100 bases:

>100_bases
GCCCCCTCCACCAACAGCAGCTTAGCAGTGGGCTGCAATTTGGTTGGCTTCGCGAGGTGGATAGGTCAAGGCGGCGAATA
GCAGGACGATGAGATCAAAC

Product: deoxyribodipyrimidine photolyase-like protein

Products: NA

Alternate protein names: Deoxyribodipyrimidine Photolyase-Like Protein; Photolyase; Deoxyribodipyrimidine Photolyase Family Protein; Deoxyribodipyrimidine Photolyase; Photolyase Protein Family Protein; Deoxyribodipyrimidine Photolyase-Like Protein Protein; Photolyase Family Protein; Cryptochrome/Photolyase; DNA Photolyase; Bcct Transporter; Protein Related Deoxyribodipyrimidine Photolyase; Deoxyribodipyrimidine Photo-Lyase; Cryptochrome/Photolyase-Related; Photolyase Related Protein; BCCT Transporter; Alpha-Deoxyribodipyrimidine Photolyase-Related Protein; Deoxyribodipyrimidine Photolyase Related Protein; A Deoxyribodipyrimidine Photolyase-Like Protein; Deoxyribodipyrimidine Photolyase Homolog

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MESTLIYPHQLYESHPAVSPERISFLIEEPLFFRQYPFHQKKIILHRASMKSYGDRLQTQGITAQYLESHDLESSSTVFA
ILKSQGIRCAHICEVTDDWLEQRINKAALTFDIQLYWYPTPNFLTQTSALESLLPTNKSLRMNSFYIKQRQRLGILLDGE
GPVGGKWSYDADNRKRLPQKIELPRIQWPAANTYVKEAVIYTQQHFASNPGSSHGFVYPIDHDSAVQFLYQFLETRIDQY
GAYQDAIDTNQSYLFHSVLTPALNIGLLHPEEIVQATLDRHAERPIPLNSLEGFIRQVIGWREYVRGVYLLKGRTQRTTN
FFQHQRPIPEDFWDANTDILPFDSAMARVLDNSYANHIERLMVFSNLFLLCEFDPDQVYRWFSSLFIDAFDWVMVPNVYG
MGQYADGGLMITKPYVSSSNYLRKMSYFKPGDWSTLWDGLYWRFMHKHRSLFERNPRTRMTVSHLDRMGDKLDQHLQVSA
AFLDGF

Sequences:

>Translated_486_residues
MESTLIYPHQLYESHPAVSPERISFLIEEPLFFRQYPFHQKKIILHRASMKSYGDRLQTQGITAQYLESHDLESSSTVFA
ILKSQGIRCAHICEVTDDWLEQRINKAALTFDIQLYWYPTPNFLTQTSALESLLPTNKSLRMNSFYIKQRQRLGILLDGE
GPVGGKWSYDADNRKRLPQKIELPRIQWPAANTYVKEAVIYTQQHFASNPGSSHGFVYPIDHDSAVQFLYQFLETRIDQY
GAYQDAIDTNQSYLFHSVLTPALNIGLLHPEEIVQATLDRHAERPIPLNSLEGFIRQVIGWREYVRGVYLLKGRTQRTTN
FFQHQRPIPEDFWDANTDILPFDSAMARVLDNSYANHIERLMVFSNLFLLCEFDPDQVYRWFSSLFIDAFDWVMVPNVYG
MGQYADGGLMITKPYVSSSNYLRKMSYFKPGDWSTLWDGLYWRFMHKHRSLFERNPRTRMTVSHLDRMGDKLDQHLQVSA
AFLDGF
>Mature_486_residues
MESTLIYPHQLYESHPAVSPERISFLIEEPLFFRQYPFHQKKIILHRASMKSYGDRLQTQGITAQYLESHDLESSSTVFA
ILKSQGIRCAHICEVTDDWLEQRINKAALTFDIQLYWYPTPNFLTQTSALESLLPTNKSLRMNSFYIKQRQRLGILLDGE
GPVGGKWSYDADNRKRLPQKIELPRIQWPAANTYVKEAVIYTQQHFASNPGSSHGFVYPIDHDSAVQFLYQFLETRIDQY
GAYQDAIDTNQSYLFHSVLTPALNIGLLHPEEIVQATLDRHAERPIPLNSLEGFIRQVIGWREYVRGVYLLKGRTQRTTN
FFQHQRPIPEDFWDANTDILPFDSAMARVLDNSYANHIERLMVFSNLFLLCEFDPDQVYRWFSSLFIDAFDWVMVPNVYG
MGQYADGGLMITKPYVSSSNYLRKMSYFKPGDWSTLWDGLYWRFMHKHRSLFERNPRTRMTVSHLDRMGDKLDQHLQVSA
AFLDGF

Specific function: Unknown

COG id: COG3046

COG function: function code R; Uncharacterized protein related to deoxyribodipyrimidine photolyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56766; Mature: 56766

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESTLIYPHQLYESHPAVSPERISFLIEEPLFFRQYPFHQKKIILHRASMKSYGDRLQTQ
CCCCEECHHHHHHCCCCCCHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
GITAQYLESHDLESSSTVFAILKSQGIRCAHICEVTDDWLEQRINKAALTFDIQLYWYPT
CCHHHHHHHCCCCCCCCEEEEEHHCCCCEEEHHHCCHHHHHHHHCCEEEEEEEEEEEECC
PNFLTQTSALESLLPTNKSLRMNSFYIKQRQRLGILLDGEGPVGGKWSYDADNRKRLPQK
CCHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHCCCCC
IELPRIQWPAANTYVKEAVIYTQQHFASNPGSSHGFVYPIDHDSAVQFLYQFLETRIDQY
CCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
GAYQDAIDTNQSYLFHSVLTPALNIGLLHPEEIVQATLDRHAERPIPLNSLEGFIRQVIG
CCHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
WREYVRGVYLLKGRTQRTTNFFQHQRPIPEDFWDANTDILPFDSAMARVLDNSYANHIER
HHHHHCEEEEECCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LMVFSNLFLLCEFDPDQVYRWFSSLFIDAFDWVMVPNVYGMGQYADGGLMITKPYVSSSN
HHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCEEEEECCCCCCH
YLRKMSYFKPGDWSTLWDGLYWRFMHKHRSLFERNPRTRMTVSHLDRMGDKLDQHLQVSA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
AFLDGF
HHHCCC
>Mature Secondary Structure
MESTLIYPHQLYESHPAVSPERISFLIEEPLFFRQYPFHQKKIILHRASMKSYGDRLQTQ
CCCCEECHHHHHHCCCCCCHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
GITAQYLESHDLESSSTVFAILKSQGIRCAHICEVTDDWLEQRINKAALTFDIQLYWYPT
CCHHHHHHHCCCCCCCCEEEEEHHCCCCEEEHHHCCHHHHHHHHCCEEEEEEEEEEEECC
PNFLTQTSALESLLPTNKSLRMNSFYIKQRQRLGILLDGEGPVGGKWSYDADNRKRLPQK
CCHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHCCCCC
IELPRIQWPAANTYVKEAVIYTQQHFASNPGSSHGFVYPIDHDSAVQFLYQFLETRIDQY
CCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
GAYQDAIDTNQSYLFHSVLTPALNIGLLHPEEIVQATLDRHAERPIPLNSLEGFIRQVIG
CCHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
WREYVRGVYLLKGRTQRTTNFFQHQRPIPEDFWDANTDILPFDSAMARVLDNSYANHIER
HHHHHCEEEEECCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LMVFSNLFLLCEFDPDQVYRWFSSLFIDAFDWVMVPNVYGMGQYADGGLMITKPYVSSSN
HHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCEEEEECCCCCCH
YLRKMSYFKPGDWSTLWDGLYWRFMHKHRSLFERNPRTRMTVSHLDRMGDKLDQHLQVSA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
AFLDGF
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA