Click here to switch to the map view.

The map label for this gene is 158338740

Identifier: 158338740

GI number: 158338740

Start: 5716226

End: 5716807

Strand: Direct

Name: 158338740

Synonym: AM1_5649

Alternate gene names: NA

Gene position: 5716226-5716807 (Clockwise)

Preceding gene: 158338739

Following gene: 158338741

Centisome position: 87.89

GC content: 44.67

Gene sequence:

>582_bases
ATGAGTTATTTTCGAAACTTTAGACGATTTTTTCAGCCATTGAGTCATCTTTGGCGTTGGTTGGCTTTGGCCGTAGCTAC
CGCTATTCTTTGCAGTAATTTTGTCTGGATATCAGCGGCCATGGGTCAAATTCCTGGTAGCTTCCTGCCATCGATATCAG
GCCAGGCGAATTCGTCCGCCAATCCAATTAAGGGACTGAAACAAAATTCCTCACTGAATGAGGATTTTGTGGTTAAGGGT
ATTTATTTAGATGGTCGGCGAATGGTTGATATTGCCGTTCCAGCTTCGAAAGTCCAAAATGACTCATCGGAGGAAACTGA
AGAGTCTACGACGTCCGTGTCAATTTCTAACCGGGCCGAAGTGATTCAAGATCGGTTGCAAGACTTAGCGCAAGATAATC
TCAATCGCAGCTCTCTGACCGTTGATTTTCAAATAGATCCTGAAAACCAGTTGCCTCGAATCATGGTCAATGGGAGCTAT
TTGATGACGGTGACGACCAGCGATGCAGAGGTTCAAGGGGACAATCTAGTGCAGAGATCTGTAAATAGTTCATCAGCTAT
AGTCGAGGTTGGAATCCCTTAA

Upstream 100 bases:

>100_bases
CTATCGATGCTCGGAGGTGGTGAAAAGAGTCTTTTCCTCCTCCCTGTAAGAGAGCCAAGGATTTTACCTTGCTGTATTCA
AACGTATTGAATGTGCCTGT

Downstream 100 bases:

>100_bases
ATTGCCATTGGAAAGGTTTGGCCATCGTGTGATTGAAATACTCAATAAATTCGAGGATGCGCTGTTGCAAATCATCCTTG
GAGGTGAAATTGCCTCGACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSYFRNFRRFFQPLSHLWRWLALAVATAILCSNFVWISAAMGQIPGSFLPSISGQANSSANPIKGLKQNSSLNEDFVVKG
IYLDGRRMVDIAVPASKVQNDSSEETEESTTSVSISNRAEVIQDRLQDLAQDNLNRSSLTVDFQIDPENQLPRIMVNGSY
LMTVTTSDAEVQGDNLVQRSVNSSSAIVEVGIP

Sequences:

>Translated_193_residues
MSYFRNFRRFFQPLSHLWRWLALAVATAILCSNFVWISAAMGQIPGSFLPSISGQANSSANPIKGLKQNSSLNEDFVVKG
IYLDGRRMVDIAVPASKVQNDSSEETEESTTSVSISNRAEVIQDRLQDLAQDNLNRSSLTVDFQIDPENQLPRIMVNGSY
LMTVTTSDAEVQGDNLVQRSVNSSSAIVEVGIP
>Mature_192_residues
SYFRNFRRFFQPLSHLWRWLALAVATAILCSNFVWISAAMGQIPGSFLPSISGQANSSANPIKGLKQNSSLNEDFVVKGI
YLDGRRMVDIAVPASKVQNDSSEETEESTTSVSISNRAEVIQDRLQDLAQDNLNRSSLTVDFQIDPENQLPRIMVNGSYL
MTVTTSDAEVQGDNLVQRSVNSSSAIVEVGIP

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21259; Mature: 21128

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYFRNFRRFFQPLSHLWRWLALAVATAILCSNFVWISAAMGQIPGSFLPSISGQANSSA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
NPIKGLKQNSSLNEDFVVKGIYLDGRRMVDIAVPASKVQNDSSEETEESTTSVSISNRAE
CCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCHHHHCCCCCHHHHHHHHEEEECHHHH
VIQDRLQDLAQDNLNRSSLTVDFQIDPENQLPRIMVNGSYLMTVTTSDAEVQGDNLVQRS
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEECCEEEEEEECCCCCCCCCHHHHHH
VNSSSAIVEVGIP
CCCCCCEEEECCC
>Mature Secondary Structure 
SYFRNFRRFFQPLSHLWRWLALAVATAILCSNFVWISAAMGQIPGSFLPSISGQANSSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
NPIKGLKQNSSLNEDFVVKGIYLDGRRMVDIAVPASKVQNDSSEETEESTTSVSISNRAE
CCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCHHHHCCCCCHHHHHHHHEEEECHHHH
VIQDRLQDLAQDNLNRSSLTVDFQIDPENQLPRIMVNGSYLMTVTTSDAEVQGDNLVQRS
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEECCEEEEEEECCCCCCCCCHHHHHH
VNSSSAIVEVGIP
CCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA