Click here to switch to the map view.

The map label for this gene is sun [H]

Identifier: 158338705

GI number: 158338705

Start: 5674298

End: 5675629

Strand: Reverse

Name: sun [H]

Synonym: AM1_5613

Alternate gene names: 158338705

Gene position: 5675629-5674298 (Counterclockwise)

Preceding gene: 158338707

Following gene: 158338704

Centisome position: 87.27

GC content: 51.65

Gene sequence:

>1332_bases
ATGACCCCCAATCCTCGACAACTGGCTTATCGGGGCCTCAAAGCAGTCCATCGAGGAGCCTATGCAGACGTTGCCCTTAG
TCGGGTGATGCCAAAAACGATAGCCGATGCCGATCGCCGCCTATTAACTGAGCTACTTTACGGCAGTGTTCGTCGCCAAA
GGACTCTGGATGCGCTGATTGACCAATTTGCCAAAAAGCCTGCCCATCAGCAGCCGCCTGATTTACGCACCTTATTGCAT
TTGGGACTTTATCAACTGCGCTTCCTAGACCATATTCCTGATGCTGCCGCTATTTTCACCACCGTGGAGCTAGCGAAACA
GAATCAACTGTCGGGTTTGTCGGGGTTCGTCAACGGATTGCTTCGGCAATATGCACGGGCAGCCGCCAACTTGAATGACC
CCCTAGAGTTACCCCCTGATCCGATTCAGCACCTAGGGATTCTGTATAGTTATCCAGATTGGATTGTTCAAGTCTGGCAT
GATCAACTTGGCTCGGAAGAGACGGAAAAACTATGTGATTACTGCAACCAGCCTCCCCATATCGATTTACGAATTAATTC
CTTAAAGACGGATCGGGAGTCGGTGCGATCGCAACTTGCATCAGCAGGAGTCACCACAACGCCCCTCCCCCATTTACCCC
AAGCCCTCAGAATCGAAGGTAAATCCGGTCCCATTCCCCAGTTGCCTGGTTTTCAGGAGGGATTGTGGACTGTGCAAGAG
GCGAGCGCCCAGCTTGTCGGACATTTGCTGAATCCTCAACCCGGAGCCATTGCCCTGGATGTCTGTGCCGCACCGGGCGG
GAAAACCACTCATATAGCGGAGCTAATGGAGAATCAGGGGGAGGTTTGGGCGTGCGATCGCACCCCGTCTCGCTTACGCA
AGTTGAATCAAAACACCCAACGTTTAGGGATCGATACCGTCACCATCTGGACTGGGGATAGTCGGCAACTCTCCAACCAT
ATTCCTCTGGCTGACTATGTATTGGTAGACGCCCCCTGTTCTGGCTTAGGGACCTTACATCGTCACGCCGATGCCCGTTG
GCAGCAAACTCCAGACAATATTCAAGACTTATCAACCCTTCAGCTCGATCTACTCCTGAATAGTGCCCGTAGAGTAAAAC
CTGGGGGGATACTCCTCTATTCCACCTGCACGCTCCATCCTCTAGAGAATGAGAATATTATTGACCAATTTCTGGCACAG
ATGCCTCAATGGCAAACCCAACAGCCTATAGCAGAATGGGTGCCCACTTCAGGCCCACAAAGCAGCGTCAAGATATTGCC
TCATCAGCAAAACATGGATGGATTTTTCATGGCTATTTTGCGCCAGGGATAG

Upstream 100 bases:

>100_bases
TGAGTCGCAGATATGCTTCAGAACATGGGGGGATTAACGGTCTAGCCGTGCATGAACCTGAGTCCTTATACAATGAGGCC
AGTTGCTGAACCAGTACTGA

Downstream 100 bases:

>100_bases
GGCCAGTGAACCTATGAACGATACCCAGTTTGATAATAATTATTAGTACTTCATAAAACTAGGTTTTACGTTTAGGTCTC
GAAATCTGATTTTGTGTATA

Product: ribosomal RNA small subunit methyltransferase B

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MTPNPRQLAYRGLKAVHRGAYADVALSRVMPKTIADADRRLLTELLYGSVRRQRTLDALIDQFAKKPAHQQPPDLRTLLH
LGLYQLRFLDHIPDAAAIFTTVELAKQNQLSGLSGFVNGLLRQYARAAANLNDPLELPPDPIQHLGILYSYPDWIVQVWH
DQLGSEETEKLCDYCNQPPHIDLRINSLKTDRESVRSQLASAGVTTTPLPHLPQALRIEGKSGPIPQLPGFQEGLWTVQE
ASAQLVGHLLNPQPGAIALDVCAAPGGKTTHIAELMENQGEVWACDRTPSRLRKLNQNTQRLGIDTVTIWTGDSRQLSNH
IPLADYVLVDAPCSGLGTLHRHADARWQQTPDNIQDLSTLQLDLLLNSARRVKPGGILLYSTCTLHPLENENIIDQFLAQ
MPQWQTQQPIAEWVPTSGPQSSVKILPHQQNMDGFFMAILRQG

Sequences:

>Translated_443_residues
MTPNPRQLAYRGLKAVHRGAYADVALSRVMPKTIADADRRLLTELLYGSVRRQRTLDALIDQFAKKPAHQQPPDLRTLLH
LGLYQLRFLDHIPDAAAIFTTVELAKQNQLSGLSGFVNGLLRQYARAAANLNDPLELPPDPIQHLGILYSYPDWIVQVWH
DQLGSEETEKLCDYCNQPPHIDLRINSLKTDRESVRSQLASAGVTTTPLPHLPQALRIEGKSGPIPQLPGFQEGLWTVQE
ASAQLVGHLLNPQPGAIALDVCAAPGGKTTHIAELMENQGEVWACDRTPSRLRKLNQNTQRLGIDTVTIWTGDSRQLSNH
IPLADYVLVDAPCSGLGTLHRHADARWQQTPDNIQDLSTLQLDLLLNSARRVKPGGILLYSTCTLHPLENENIIDQFLAQ
MPQWQTQQPIAEWVPTSGPQSSVKILPHQQNMDGFFMAILRQG
>Mature_442_residues
TPNPRQLAYRGLKAVHRGAYADVALSRVMPKTIADADRRLLTELLYGSVRRQRTLDALIDQFAKKPAHQQPPDLRTLLHL
GLYQLRFLDHIPDAAAIFTTVELAKQNQLSGLSGFVNGLLRQYARAAANLNDPLELPPDPIQHLGILYSYPDWIVQVWHD
QLGSEETEKLCDYCNQPPHIDLRINSLKTDRESVRSQLASAGVTTTPLPHLPQALRIEGKSGPIPQLPGFQEGLWTVQEA
SAQLVGHLLNPQPGAIALDVCAAPGGKTTHIAELMENQGEVWACDRTPSRLRKLNQNTQRLGIDTVTIWTGDSRQLSNHI
PLADYVLVDAPCSGLGTLHRHADARWQQTPDNIQDLSTLQLDLLLNSARRVKPGGILLYSTCTLHPLENENIIDQFLAQM
PQWQTQQPIAEWVPTSGPQSSVKILPHQQNMDGFFMAILRQG

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:
GO:0003723: Ribosomal RNA small subunit methyltransferase B
GO:0005737: Ribosomal RNA small subunit methyltransferase B
GO:0006355: Ribosomal RNA small subunit methyltransferase B
GO:0006364: Ribosomal RNA small subunit methyltransferase B
GO:0008168: Ribosomal RNA small subunit methyltransferase B
GO:0008649: Ribosomal RNA small subunit methyltransferase B
GO:0016740: Ribosomal RNA small subunit methyltransferase B
GO:0031167: Ribosomal RNA small subunit methyltransferase B
GO:0032259: Ribosomal RNA small subunit methyltransferase B

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=323, Percent_Identity=31.5789473684211, Blast_Score=145, Evalue=7e-35,
Organism=Homo sapiens, GI76150623, Length=323, Percent_Identity=31.5789473684211, Blast_Score=145, Evalue=7e-35,
Organism=Homo sapiens, GI32698918, Length=187, Percent_Identity=37.9679144385027, Blast_Score=118, Evalue=9e-27,
Organism=Homo sapiens, GI39995082, Length=274, Percent_Identity=28.1021897810219, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI301336155, Length=274, Percent_Identity=28.1021897810219, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI23199998, Length=225, Percent_Identity=28.8888888888889, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI270288818, Length=225, Percent_Identity=28.8888888888889, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI8922322, Length=225, Percent_Identity=28.8888888888889, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI270288816, Length=225, Percent_Identity=28.8888888888889, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI11545785, Length=155, Percent_Identity=36.1290322580645, Blast_Score=77, Evalue=4e-14,
Organism=Escherichia coli, GI2367212, Length=441, Percent_Identity=34.4671201814059, Blast_Score=202, Evalue=4e-53,
Organism=Escherichia coli, GI87081985, Length=278, Percent_Identity=31.294964028777, Blast_Score=135, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17536757, Length=320, Percent_Identity=29.0625, Blast_Score=131, Evalue=6e-31,
Organism=Caenorhabditis elegans, GI71998419, Length=245, Percent_Identity=27.7551020408163, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI115534021, Length=245, Percent_Identity=27.7551020408163, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI25143471, Length=271, Percent_Identity=25.830258302583, Blast_Score=79, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6324268, Length=278, Percent_Identity=34.1726618705036, Blast_Score=139, Evalue=9e-34,
Organism=Saccharomyces cerevisiae, GI6319447, Length=264, Percent_Identity=25.7575757575758, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI22024126, Length=321, Percent_Identity=29.595015576324, Blast_Score=134, Evalue=8e-32,
Organism=Drosophila melanogaster, GI21356579, Length=171, Percent_Identity=31.5789473684211, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24668781, Length=256, Percent_Identity=28.90625, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI21356513, Length=256, Percent_Identity=28.90625, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI21355201, Length=304, Percent_Identity=24.3421052631579, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI19920494, Length=173, Percent_Identity=32.3699421965318, Blast_Score=74, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 49294; Mature: 49163

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCEEECCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
TPNPRQLAYRGLKAVHRGAYADVALSRVMPKTIADADRRLLTELLYGSVRRQRTLDALI
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQFAKKPAHQQPPDLRTLLHLGLYQLRFLDHIPDAAAIFTTVELAKQNQLSGLSGFVNGL
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
LRQYARAAANLNDPLELPPDPIQHLGILYSYPDWIVQVWHDQLGSEETEKLCDYCNQPPH
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
IDLRINSLKTDRESVRSQLASAGVTTTPLPHLPQALRIEGKSGPIPQLPGFQEGLWTVQE
EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHH
ASAQLVGHLLNPQPGAIALDVCAAPGGKTTHIAELMENQGEVWACDRTPSRLRKLNQNTQ
HHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHCCCHH
RLGIDTVTIWTGDSRQLSNHIPLADYVLVDAPCSGLGTLHRHADARWQQTPDNIQDLSTL
HCCCEEEEEEECCCHHHHCCCCCHHEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHH
QLDLLLNSARRVKPGGILLYSTCTLHPLENENIIDQFLAQMPQWQTQQPIAEWVPTSGPQ
HHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHCCCCCCC
SSVKILPHQQNMDGFFMAILRQG
CCEEECCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]