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The map label for this gene is yjcF [C]

Identifier: 158338659

GI number: 158338659

Start: 5615108

End: 5615644

Strand: Reverse

Name: yjcF [C]

Synonym: AM1_5563

Alternate gene names: 158338659

Gene position: 5615644-5615108 (Counterclockwise)

Preceding gene: 158338661

Following gene: 158338658

Centisome position: 86.35

GC content: 43.02

Gene sequence:

>537_bases
ATGCTAAAGATTAGTGCTGAAGATTTACTCGCCAAATATGACTCAGGAATTAGAGACTTCAGCCATACTGACCTAAGTCA
AATTAATTTGTTTGAGGCATATTTGCCAGAGATCAATCTTCAAGGGAGTGACTTAACCGGCTCCAATCTAGCTTATGCAA
CCTTGAGTCGGTCTAATTTAACTGGAACCAACTTAAACCAAGCACAGCTAGAAAAAACTTGGTTGGACTCTACTCTGTTA
GCCGATTCCAAACTAAAAGAGGCTTCGCTAATCGGGGCAGAATTAGCATTTGCACAGCTTATCAGAGCGGATCTAACCCA
TGCCGATTTGCAAAACGCCAATTTACAGCAAGCCAATCTCTCTGCTGCTCATCTAATTGGGACCAATCTCAGTGGAGCCA
ATATGGAGCAGTGCAACTTGTCACAATCCATCTTAATTCGCAGCAATTTTTTCCGCGCCAGTTTTGTTGACTTCAGTGGT
ACTGAGATTCATCCCACCACCATTTTGCCCAATGGATATCCCGGCAGTTCTCAGTAA

Upstream 100 bases:

>100_bases
AGACTGGCCTGCTCCCCAATGCAGGATTGTAAATTCATATTAAGCATTAGGTATAAATGCTCAGCTCACCTAATAGGGAT
ATGCGTCGTTAGAAATCTAT

Downstream 100 bases:

>100_bases
ACTGGGGAATCATCTGATATTCTCTGGCCTCTAAGGAAATTAATCTAAATGTGTTCCCTGCAATCACGGCTCAAATATAT
AAGAGAATCGTCATATAGGT

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MLKISAEDLLAKYDSGIRDFSHTDLSQINLFEAYLPEINLQGSDLTGSNLAYATLSRSNLTGTNLNQAQLEKTWLDSTLL
ADSKLKEASLIGAELAFAQLIRADLTHADLQNANLQQANLSAAHLIGTNLSGANMEQCNLSQSILIRSNFFRASFVDFSG
TEIHPTTILPNGYPGSSQ

Sequences:

>Translated_178_residues
MLKISAEDLLAKYDSGIRDFSHTDLSQINLFEAYLPEINLQGSDLTGSNLAYATLSRSNLTGTNLNQAQLEKTWLDSTLL
ADSKLKEASLIGAELAFAQLIRADLTHADLQNANLQQANLSAAHLIGTNLSGANMEQCNLSQSILIRSNFFRASFVDFSG
TEIHPTTILPNGYPGSSQ
>Mature_178_residues
MLKISAEDLLAKYDSGIRDFSHTDLSQINLFEAYLPEINLQGSDLTGSNLAYATLSRSNLTGTNLNQAQLEKTWLDSTLL
ADSKLKEASLIGAELAFAQLIRADLTHADLQNANLQQANLSAAHLIGTNLSGANMEQCNLSQSILIRSNFFRASFVDFSG
TEIHPTTILPNGYPGSSQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 pentapeptide repeat domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 19304; Mature: 19304

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKISAEDLLAKYDSGIRDFSHTDLSQINLFEAYLPEINLQGSDLTGSNLAYATLSRSNL
CEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCC
TGTNLNQAQLEKTWLDSTLLADSKLKEASLIGAELAFAQLIRADLTHADLQNANLQQANL
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
SAAHLIGTNLSGANMEQCNLSQSILIRSNFFRASFVDFSGTEIHPTTILPNGYPGSSQ
CEEEEEECCCCCCCCHHHCCCCEEEEECCCCEEEEECCCCCEECCEEECCCCCCCCCC
>Mature Secondary Structure
MLKISAEDLLAKYDSGIRDFSHTDLSQINLFEAYLPEINLQGSDLTGSNLAYATLSRSNL
CEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCC
TGTNLNQAQLEKTWLDSTLLADSKLKEASLIGAELAFAQLIRADLTHADLQNANLQQANL
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
SAAHLIGTNLSGANMEQCNLSQSILIRSNFFRASFVDFSGTEIHPTTILPNGYPGSSQ
CEEEEEECCCCCCCCHHHCCCCEEEEECCCCEEEEECCCCCEECCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]