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The map label for this gene is rbpE [H]

Identifier: 158338654

GI number: 158338654

Start: 5609853

End: 5610113

Strand: Reverse

Name: rbpE [H]

Synonym: AM1_5557

Alternate gene names: 158338654

Gene position: 5610113-5609853 (Counterclockwise)

Preceding gene: 158338656

Following gene: 158338652

Centisome position: 86.26

GC content: 48.28

Gene sequence:

>261_bases
ATGTCGATTTATGTTGGGAATTTATCCTACGAAGCGAGCCAAGATGACGTGACTGCCGTATTTGCAGAGTATGGCAAAGT
AGTGAAAGTTCACCTTCCCGTTGATCGGGAAACAGGCCGCAAACGCGGTTTTGGATTTGTGGATATGGAGAATGATTCAG
AAGAAGAGGCTGCGATTGCAGACCTAGATGGTGCTGAGTGGATGGGGCGCCAATTAAAAGTCAACAAAGCTCGCCCTCGT
ACTCCCAAACCTTCCTGGTAG

Upstream 100 bases:

>100_bases
CTGCTGTGTTGGCTGTGACTGTAAAGCTACACCTTTAGTTCAACAATAGACAGGATATTTCCTGTTTACCCTTATTTACC
CGCCCTTTGGAGATACACTA

Downstream 100 bases:

>100_bases
AGATATTGCAGAGGTCACAATATCTGGGGCTTCTGCAAAAATAGTCTTCAAAATCTGATCTATTTCACTTCTGTTTTGGA
TAGGCAACAAATCATAGGAA

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MSIYVGNLSYEASQDDVTAVFAEYGKVVKVHLPVDRETGRKRGFGFVDMENDSEEEAAIADLDGAEWMGRQLKVNKARPR
TPKPSW

Sequences:

>Translated_86_residues
MSIYVGNLSYEASQDDVTAVFAEYGKVVKVHLPVDRETGRKRGFGFVDMENDSEEEAAIADLDGAEWMGRQLKVNKARPR
TPKPSW
>Mature_85_residues
SIYVGNLSYEASQDDVTAVFAEYGKVVKVHLPVDRETGRKRGFGFVDMENDSEEEAAIADLDGAEWMGRQLKVNKARPRT
PKPSW

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=39.4736842105263, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=39.4736842105263, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI47271443, Length=77, Percent_Identity=42.8571428571429, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI35493811, Length=81, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI4757926, Length=81, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI4502847, Length=83, Percent_Identity=36.144578313253, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI4507499, Length=83, Percent_Identity=36.144578313253, Blast_Score=62, Evalue=1e-10,
Organism=Homo sapiens, GI77695912, Length=83, Percent_Identity=36.144578313253, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=39.4736842105263, Blast_Score=73, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17508587, Length=81, Percent_Identity=38.2716049382716, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=40.2597402597403, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=36.3636363636364, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17539498, Length=90, Percent_Identity=34.4444444444444, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=38.1578947368421, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI19920866, Length=80, Percent_Identity=35, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582412, Length=80, Percent_Identity=35, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582417, Length=80, Percent_Identity=35, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45550943, Length=80, Percent_Identity=35, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582419, Length=80, Percent_Identity=35, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582423, Length=80, Percent_Identity=35, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582421, Length=80, Percent_Identity=35, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9662; Mature: 9531

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYVGNLSYEASQDDVTAVFAEYGKVVKVHLPVDRETGRKRGFGFVDMENDSEEEAAIA
CEEEECCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCEEEE
DLDGAEWMGRQLKVNKARPRTPKPSW
CCCCCHHCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure 
SIYVGNLSYEASQDDVTAVFAEYGKVVKVHLPVDRETGRKRGFGFVDMENDSEEEAAIA
EEEECCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCEEEE
DLDGAEWMGRQLKVNKARPRTPKPSW
CCCCCHHCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]