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The map label for this gene is ctpA [H]

Identifier: 158338649

GI number: 158338649

Start: 5605343

End: 5606716

Strand: Reverse

Name: ctpA [H]

Synonym: AM1_5553

Alternate gene names: 158338649

Gene position: 5606716-5605343 (Counterclockwise)

Preceding gene: 158338651

Following gene: 158338646

Centisome position: 86.21

GC content: 45.41

Gene sequence:

>1374_bases
ATGAATCAATCATTCAAGCTCCGTTCGACGACTCGTAGCCATGGGATTTTGAAAAGTGTCGTCTTAGTTCCAGCAACGAC
CTTTACCTTGTTACAGCCTTGTTTAACGAGTGAAGTCCAGGCTGCTCTTGAAGATAGTCCAAAGGTTGTTCTGGATGAAG
CTTGGCAGTTAGTCAACCGCTACTATGTTGACGGTACCTTTAATCAGAAGGATTGGCAGGCAACTCGTCAGACTTTGTTA
GGTGAGCAGTATGTTTCCAAACAGCATGCTTATTCTGCCCTCCGTAAAGCCTTAGCGGAACTGGATGATCCCTACACACG
GTTCATGTCGCCTCAAGAGTTTAAGGCTCTGACAACTCAAACTTCAGGTCAGTTGTCTGGTATTGGTATTCGGTTAGAAC
AGAATAAAGCGACGAATGCAATTACAGTCATTAAGCTGTTACCTAATGCCCCTGCATTAAAGGCTGGCTTACAGGTTGGA
GATCGTATCCTAGCTATCGATGGCAACAAAACTGATGTCATGGATCTTAAAGATGCCTCCAGTTTAATTCGAGGGGAGAT
TGATACTGCAGTCAAGTTACGGATCAGTCGAGCTGGGCAAAATCCGTTTGACCTGAATATTACCCGAGACGTCATTGAAC
TCCCTACAGTTCATACCAAAATCAAACAGGAAGGGAATAATCGTGTTGGCTACATTCGGTTGCTGGAGTTTAGCGCTCAT
GCCTCCGAGCAAATGAAAACGGCGATCAAAGAACTGGAAGCTCAAAATGTCGACGGCTTTGTGCTCGATTTAAGGGGGAA
TCCAGGAGGACTTTTGAATGCCAGTATCGAAATTGCTGAAATGTGGCTAAATCGAGGATTTATCGTTCACACGGTTGATC
GCAAAGGCAAGCAAGATGATATTCGGGCACATCCCACTGCACTAACCAAGCGCCCCTTGGTGGTCTTGGTTGATGGAGAT
TCTGCAAGTTCTAGCGAAATTCTGACAGGGGCTTTACAGGATAACCATCGAGCAAAAGTGATCGGAACATCGACGTTTGG
GAAGGCCTTAGTACAGTCTGTCCACAAACTATCGGATGGCTCAGGGGTTGCGATTACTGTATCTCAGTACTTCACTCCAA
ACGGGACTGATATTAGCCACAAAGGAATTACACCTGATATTCCTGTGAAGCTGACGCCGGAGCAATTGCAAACCCTTTAC
TCGGATCCCAGTCAACTGGCTACTTTTAATGATCCTCAATACATGCAGGCGATCCGAAGTCTACAGCAATCCATTCATTC
ACATAATGGGAAACCTCAAAATTCCGTAGCAATCCCTAAGCAAAACAGAAAGGCTGAAACGGTGAATCGTGCTCAAGCAG
ATTCTATGAAGTGA

Upstream 100 bases:

>100_bases
CGTTAGCTGTTCAGTGAGTGTACCCACTTTTTTGCCTTGGCAAAGATGGCAGGTTTCTTTGAACGCTTGGCCTCGGTAAC
CATTCTTTCTTCTTCGGTAT

Downstream 100 bases:

>100_bases
GTTTCCATAAGGCTGATCTGCAATCTTTGGTCCGAACAACCCAACGAGTAGAAAATCCCCACAGTCGCTGTGCAAGGTCC
AAATTCAAATGTTCGGCTGA

Product: carboxyl--terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MNQSFKLRSTTRSHGILKSVVLVPATTFTLLQPCLTSEVQAALEDSPKVVLDEAWQLVNRYYVDGTFNQKDWQATRQTLL
GEQYVSKQHAYSALRKALAELDDPYTRFMSPQEFKALTTQTSGQLSGIGIRLEQNKATNAITVIKLLPNAPALKAGLQVG
DRILAIDGNKTDVMDLKDASSLIRGEIDTAVKLRISRAGQNPFDLNITRDVIELPTVHTKIKQEGNNRVGYIRLLEFSAH
ASEQMKTAIKELEAQNVDGFVLDLRGNPGGLLNASIEIAEMWLNRGFIVHTVDRKGKQDDIRAHPTALTKRPLVVLVDGD
SASSSEILTGALQDNHRAKVIGTSTFGKALVQSVHKLSDGSGVAITVSQYFTPNGTDISHKGITPDIPVKLTPEQLQTLY
SDPSQLATFNDPQYMQAIRSLQQSIHSHNGKPQNSVAIPKQNRKAETVNRAQADSMK

Sequences:

>Translated_457_residues
MNQSFKLRSTTRSHGILKSVVLVPATTFTLLQPCLTSEVQAALEDSPKVVLDEAWQLVNRYYVDGTFNQKDWQATRQTLL
GEQYVSKQHAYSALRKALAELDDPYTRFMSPQEFKALTTQTSGQLSGIGIRLEQNKATNAITVIKLLPNAPALKAGLQVG
DRILAIDGNKTDVMDLKDASSLIRGEIDTAVKLRISRAGQNPFDLNITRDVIELPTVHTKIKQEGNNRVGYIRLLEFSAH
ASEQMKTAIKELEAQNVDGFVLDLRGNPGGLLNASIEIAEMWLNRGFIVHTVDRKGKQDDIRAHPTALTKRPLVVLVDGD
SASSSEILTGALQDNHRAKVIGTSTFGKALVQSVHKLSDGSGVAITVSQYFTPNGTDISHKGITPDIPVKLTPEQLQTLY
SDPSQLATFNDPQYMQAIRSLQQSIHSHNGKPQNSVAIPKQNRKAETVNRAQADSMK
>Mature_457_residues
MNQSFKLRSTTRSHGILKSVVLVPATTFTLLQPCLTSEVQAALEDSPKVVLDEAWQLVNRYYVDGTFNQKDWQATRQTLL
GEQYVSKQHAYSALRKALAELDDPYTRFMSPQEFKALTTQTSGQLSGIGIRLEQNKATNAITVIKLLPNAPALKAGLQVG
DRILAIDGNKTDVMDLKDASSLIRGEIDTAVKLRISRAGQNPFDLNITRDVIELPTVHTKIKQEGNNRVGYIRLLEFSAH
ASEQMKTAIKELEAQNVDGFVLDLRGNPGGLLNASIEIAEMWLNRGFIVHTVDRKGKQDDIRAHPTALTKRPLVVLVDGD
SASSSEILTGALQDNHRAKVIGTSTFGKALVQSVHKLSDGSGVAITVSQYFTPNGTDISHKGITPDIPVKLTPEQLQTLY
SDPSQLATFNDPQYMQAIRSLQQSIHSHNGKPQNSVAIPKQNRKAETVNRAQADSMK

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=336, Percent_Identity=32.4404761904762, Blast_Score=145, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 50238; Mature: 50238

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQSFKLRSTTRSHGILKSVVLVPATTFTLLQPCLTSEVQAALEDSPKVVLDEAWQLVNR
CCCCEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
YYVDGTFNQKDWQATRQTLLGEQYVSKQHAYSALRKALAELDDPYTRFMSPQEFKALTTQ
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCC
TSGQLSGIGIRLEQNKATNAITVIKLLPNAPALKAGLQVGDRILAIDGNKTDVMDLKDAS
CCCCEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHCCCEEEEECCCCCCEEEHHHHH
SLIRGEIDTAVKLRISRAGQNPFDLNITRDVIELPTVHTKIKQEGNNRVGYIRLLEFSAH
HHHHCCCCCEEEEEEECCCCCCEECCEEHHHHHCCHHHHHHHHCCCCCEEEEEEEEECHH
ASEQMKTAIKELEAQNVDGFVLDLRGNPGGLLNASIEIAEMWLNRGFIVHTVDRKGKQDD
HHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEECHHHHHHHHHHCCEEEEEECCCCCCCC
IRAHPTALTKRPLVVLVDGDSASSSEILTGALQDNHRAKVIGTSTFGKALVQSVHKLSDG
CCCCCCHHCCCCEEEEECCCCCCCCHHEEEECCCCCCEEEEECCHHHHHHHHHHHHCCCC
SGVAITVSQYFTPNGTDISHKGITPDIPVKLTPEQLQTLYSDPSQLATFNDPQYMQAIRS
CCEEEEEEEEECCCCCCCCCCCCCCCCCEEECHHHHHHHHCCHHHHCCCCCHHHHHHHHH
LQQSIHSHNGKPQNSVAIPKQNRKAETVNRAQADSMK
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNQSFKLRSTTRSHGILKSVVLVPATTFTLLQPCLTSEVQAALEDSPKVVLDEAWQLVNR
CCCCEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
YYVDGTFNQKDWQATRQTLLGEQYVSKQHAYSALRKALAELDDPYTRFMSPQEFKALTTQ
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCC
TSGQLSGIGIRLEQNKATNAITVIKLLPNAPALKAGLQVGDRILAIDGNKTDVMDLKDAS
CCCCEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHCCCEEEEECCCCCCEEEHHHHH
SLIRGEIDTAVKLRISRAGQNPFDLNITRDVIELPTVHTKIKQEGNNRVGYIRLLEFSAH
HHHHCCCCCEEEEEEECCCCCCEECCEEHHHHHCCHHHHHHHHCCCCCEEEEEEEEECHH
ASEQMKTAIKELEAQNVDGFVLDLRGNPGGLLNASIEIAEMWLNRGFIVHTVDRKGKQDD
HHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEECHHHHHHHHHHCCEEEEEECCCCCCCC
IRAHPTALTKRPLVVLVDGDSASSSEILTGALQDNHRAKVIGTSTFGKALVQSVHKLSDG
CCCCCCHHCCCCEEEEECCCCCCCCHHEEEECCCCCCEEEEECCHHHHHHHHHHHHCCCC
SGVAITVSQYFTPNGTDISHKGITPDIPVKLTPEQLQTLYSDPSQLATFNDPQYMQAIRS
CCEEEEEEEEECCCCCCCCCCCCCCCCCEEECHHHHHHHHCCHHHHCCCCCHHHHHHHHH
LQQSIHSHNGKPQNSVAIPKQNRKAETVNRAQADSMK
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]