Click here to switch to the map view.

The map label for this gene is psb28

Identifier: 158338648

GI number: 158338648

Start: 5604842

End: 5605177

Strand: Direct

Name: psb28

Synonym: AM1_5552

Alternate gene names: 158338648

Gene position: 5604842-5605177 (Clockwise)

Preceding gene: 158338647

Following gene: 158338650

Centisome position: 86.18

GC content: 43.45

Gene sequence:

>336_bases
ATGTCAGCAGCAATTCAGTTTATCCGGGGCGTTGATGAAGAGGTCATCCCTGACGTACGGTTAACACGGGCTAAAGATGG
TAGTTCAGGCCGGGCTATTTTTTACTTCGAAAATCCAAATCTTATCCAAGAAGGGAAATTGGAAGTGATGGGGATGTATC
TGCAAGATGAAGAAGGAGAGTTAACGACTCTAGACGTGAGTGCCAAATTCGTCAATGGCAAGCCTCATGCTATTGAAGCT
AATTATGATATGAAATCTGAAGAAGAGTGGGATCGATTCATGAGGTTTATGAATCGGTATGCAGAATCCCACGGGCTTGG
GTTTTCGAAATCTTAG

Upstream 100 bases:

>100_bases
GAATTCAATGCTTATTGGCGGCTTCTATGGAACATTAAGGTCGAGTATGTGAGTATAGTTAAAGACAACTTAACTGTTCT
TAAAATATTCAACTCACATT

Downstream 100 bases:

>100_bases
GTTGCGGCCATCAATTTAAGAACCACCTTCCCTTCAAGTCACTTCGCTGTGCAAAAGAGTAATCATCAGCCGAACATTTG
AATTTGGACCTTGCACAGCG

Product: photosystem II reaction center protein Psb28

Products: NA

Alternate protein names: Photosystem II 13 kDa protein; Photosystem II reaction center W protein

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MSAAIQFIRGVDEEVIPDVRLTRAKDGSSGRAIFYFENPNLIQEGKLEVMGMYLQDEEGELTTLDVSAKFVNGKPHAIEA
NYDMKSEEEWDRFMRFMNRYAESHGLGFSKS

Sequences:

>Translated_111_residues
MSAAIQFIRGVDEEVIPDVRLTRAKDGSSGRAIFYFENPNLIQEGKLEVMGMYLQDEEGELTTLDVSAKFVNGKPHAIEA
NYDMKSEEEWDRFMRFMNRYAESHGLGFSKS
>Mature_110_residues
SAAIQFIRGVDEEVIPDVRLTRAKDGSSGRAIFYFENPNLIQEGKLEVMGMYLQDEEGELTTLDVSAKFVNGKPHAIEAN
YDMKSEEEWDRFMRFMNRYAESHGLGFSKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:
GO:0009523: Photosystem II reaction center Psb28 protein
GO:0009579: Photosystem II reaction center Psb28 protein
GO:0009654: Photosystem II reaction center Psb28 protein
GO:0015979: Photosystem II reaction center Psb28 protein
GO:0016020: Photosystem II reaction center Psb28 protein
GO:0042651: Photosystem II reaction center Psb28 protein

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psb28 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSB28_ACAM1 (B0CE32)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001519825.1
- GeneID:   5684343
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_5552
- HOGENOM:   HBG493836
- OMA:   RFANSYA
- ProtClustDB:   PRK13612
- BioCyc:   AMAR329726:AM1_5552-MONOMER
- GO:   GO:0015979
- HAMAP:   MF_01370
- InterPro:   IPR005610
- ProDom:   PD012692
- TIGRFAMs:   TIGR03047

Pfam domain/function: PF03912 Psb28

EC number: NA

Molecular weight: Translated: 12689; Mature: 12558

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAIQFIRGVDEEVIPDVRLTRAKDGSSGRAIFYFENPNLIQEGKLEVMGMYLQDEEGE
CCHHHHHHHCCCHHHCCCEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCC
LTTLDVSAKFVNGKPHAIEANYDMKSEEEWDRFMRFMNRYAESHGLGFSKS
EEEEEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SAAIQFIRGVDEEVIPDVRLTRAKDGSSGRAIFYFENPNLIQEGKLEVMGMYLQDEEGE
CHHHHHHHCCCHHHCCCEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCC
LTTLDVSAKFVNGKPHAIEANYDMKSEEEWDRFMRFMNRYAESHGLGFSKS
EEEEEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA