Click here to switch to the map view.

The map label for this gene is yjcF [C]

Identifier: 158338563

GI number: 158338563

Start: 5522684

End: 5523616

Strand: Reverse

Name: yjcF [C]

Synonym: AM1_5466

Alternate gene names: 158338563

Gene position: 5523616-5522684 (Counterclockwise)

Preceding gene: 158338564

Following gene: 158338561

Centisome position: 84.93

GC content: 45.23

Gene sequence:

>933_bases
ATGAAACAAATACTGAGTACTGCGATCTTGACAAGCCTTATTGGATTAGTGGGATATATCCCTAGGGTTCACAGTCAGAC
CATAAACCTCAGAAAGACCATTGAAGACCTCAGTGACTTGAGTCAAGAGGACGCCTTAAAACACCTGGCAACAACAGGTG
CTTGTTTTGGTTGCAATCTCAACAGTGCCAATCTCCAAAGAGCCTATCTAGGCTACGCCAATCTCAACAGAGTCGATCTC
AGTAGAGCTGACCTCAGCAGCGCAGATCTTAGATCTGCCAACCTTCGTGAGGCTAATCTCAGCAGAGCAAATCTCATACA
TGCCAAACTTTGGAAAACTGACCTCTCCGTCGCCAATCTCAATGGTGCTGACCTCAAGCATACCAATCTTACGAAGGCCG
ACTTAGGTTTCTCTAACCTCACTGAGTCCAACCTCAGCAATGCCAGTATTGGTGATGCCAATCTTAGAGCTGTCAACCTT
AGTAATGCTAATCTCAGCAAAGCTAGCCTCCTTAGGACAAACCTCACCTTTGCAAATTTCACCAGAGCAGACCTTAGCAA
CGCCAACTTCATGAGCACCAACCTCATAAGCGCCAATCTCACCAGCACCAACCTGAGCAACGCTGACCTGAGCAACGCCA
ATCTCACTAGGGCTGACCTCAGTAAGGCTAACTTCAGTAACACCAAACTCAACTTTGCTATTCTGTTTTCGACAGATCTC
CGAAAAACAGTAAATCTTACCCAATCTCAACTGGTGGGACAAAATTCATCATTGATTTGTAACACGCCACTTCCTCCACA
CATCAATATTGACCCAAATAGGGACTGTAACAAGCTTGCTGCGGTCTTGTTCTATAAAATCCCAGAAATTTTTCTCACCC
TAGAAGAAGCACAAGAATTCGTGAAAGAGCACCAAGAAGGGAAGAGGGATTAA

Upstream 100 bases:

>100_bases
GTTTTGAACGGATTTCAGAAGCGGTTTGTAATCAGAATCATGTTTTTCGAAACAACCTGAATATGGCCCTCTCAATAAAT
AATCTAGGGAAAATGTTGAG

Downstream 100 bases:

>100_bases
AGAGGACAAAACCCAAATTTTGGTCGTGCATCAATGAAGTGTGGGTTTGTTAAACATATTGAGTTTTCCTATCCTCTGAT
GCAATGTCCTTTATGTGGTC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKQILSTAILTSLIGLVGYIPRVHSQTINLRKTIEDLSDLSQEDALKHLATTGACFGCNLNSANLQRAYLGYANLNRVDL
SRADLSSADLRSANLREANLSRANLIHAKLWKTDLSVANLNGADLKHTNLTKADLGFSNLTESNLSNASIGDANLRAVNL
SNANLSKASLLRTNLTFANFTRADLSNANFMSTNLISANLTSTNLSNADLSNANLTRADLSKANFSNTKLNFAILFSTDL
RKTVNLTQSQLVGQNSSLICNTPLPPHINIDPNRDCNKLAAVLFYKIPEIFLTLEEAQEFVKEHQEGKRD

Sequences:

>Translated_310_residues
MKQILSTAILTSLIGLVGYIPRVHSQTINLRKTIEDLSDLSQEDALKHLATTGACFGCNLNSANLQRAYLGYANLNRVDL
SRADLSSADLRSANLREANLSRANLIHAKLWKTDLSVANLNGADLKHTNLTKADLGFSNLTESNLSNASIGDANLRAVNL
SNANLSKASLLRTNLTFANFTRADLSNANFMSTNLISANLTSTNLSNADLSNANLTRADLSKANFSNTKLNFAILFSTDL
RKTVNLTQSQLVGQNSSLICNTPLPPHINIDPNRDCNKLAAVLFYKIPEIFLTLEEAQEFVKEHQEGKRD
>Mature_310_residues
MKQILSTAILTSLIGLVGYIPRVHSQTINLRKTIEDLSDLSQEDALKHLATTGACFGCNLNSANLQRAYLGYANLNRVDL
SRADLSSADLRSANLREANLSRANLIHAKLWKTDLSVANLNGADLKHTNLTKADLGFSNLTESNLSNASIGDANLRAVNL
SNANLSKASLLRTNLTFANFTRADLSNANFMSTNLISANLTSTNLSNADLSNANLTRADLSKANFSNTKLNFAILFSTDL
RKTVNLTQSQLVGQNSSLICNTPLPPHINIDPNRDCNKLAAVLFYKIPEIFLTLEEAQEFVKEHQEGKRD

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=147, Percent_Identity=37.4149659863946, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI221377802, Length=154, Percent_Identity=35.7142857142857, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 33861; Mature: 33861

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQILSTAILTSLIGLVGYIPRVHSQTINLRKTIEDLSDLSQEDALKHLATTGACFGCNL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEECCC
NSANLQRAYLGYANLNRVDLSRADLSSADLRSANLREANLSRANLIHAKLWKTDLSVANL
CCCCCHHHEECCCCCCEEECCHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCEECC
NGADLKHTNLTKADLGFSNLTESNLSNASIGDANLRAVNLSNANLSKASLLRTNLTFANF
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCCHHCC
TRADLSNANFMSTNLISANLTSTNLSNADLSNANLTRADLSKANFSNTKLNFAILFSTDL
HHHHCCCCCEEEECEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEEECCH
RKTVNLTQSQLVGQNSSLICNTPLPPHINIDPNRDCNKLAAVLFYKIPEIFLTLEEAQEF
HHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VKEHQEGKRD
HHHHHCCCCC
>Mature Secondary Structure
MKQILSTAILTSLIGLVGYIPRVHSQTINLRKTIEDLSDLSQEDALKHLATTGACFGCNL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEECCC
NSANLQRAYLGYANLNRVDLSRADLSSADLRSANLREANLSRANLIHAKLWKTDLSVANL
CCCCCHHHEECCCCCCEEECCHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCEECC
NGADLKHTNLTKADLGFSNLTESNLSNASIGDANLRAVNLSNANLSKASLLRTNLTFANF
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCCHHCC
TRADLSNANFMSTNLISANLTSTNLSNADLSNANLTRADLSKANFSNTKLNFAILFSTDL
HHHHCCCCCEEEECEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEEECCH
RKTVNLTQSQLVGQNSSLICNTPLPPHINIDPNRDCNKLAAVLFYKIPEIFLTLEEAQEF
HHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VKEHQEGKRD
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA