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The map label for this gene is yjcF [C]

Identifier: 158338487

GI number: 158338487

Start: 5450804

End: 5452198

Strand: Reverse

Name: yjcF [C]

Synonym: AM1_5389

Alternate gene names: 158338487

Gene position: 5452198-5450804 (Counterclockwise)

Preceding gene: 158338488

Following gene: 158338486

Centisome position: 83.83

GC content: 49.53

Gene sequence:

>1395_bases
GTGGTTGCGCTCACCCTATTGAGTCAACCTGTGCAAGCAGCCAAAGGCGATCATGTTGACCAACTGAAAGAAACGCGTGA
ATGTGCCGACTGTCAGCTGGATAAAGCCAAATTAGGGGGAGCGGATCTTCGGAATGCCAACCTCAAAGGGGCCAATCTTA
AAGAAGCGAATCTGCGAGGCGCAAAGTTGGATGGGGCAGATCTCCTTCGGGCGGATCTCAAACAAGCTGATTTGCGGGAG
GCAAACCTTTCCAGTGCCCAACTTACCCTCAGCAATTTAGAAAAAAGCCAACTGGGGGCAGCCATCTTATTCCGAGCTAA
CTTATCTCAAGCCCAGCTCACCCTTAGCAATTTAGAGAATGCTCAACTCCGCGATGCCAACTTGAGCCAAGCCAATTTAA
CCGAAGCCAATTTAGCGAGGGCCAACTTAGGTAAAGCTCAGTTGAATCAGGCTAATTTGACCACCGCCAATTTATCCCAG
GCTCGATTACAGAATGCATCCCTAGTGGGAACCCAGTTGATTAACGCCAACTTAGAAGGCGCGTCTCTAAAAGGGGCCAA
TCTGATTGGGGCGGATTTAACAGGTGCTAACTTAGTGAATGCTGATCTGAGGGAGGCCAAACTAGATGACACTACTGTTA
TCGATCCGAAATGGCGGAATGCTTGGGCCATTGTCAATCAGAAGCAAATTGAAAGCCCTGTGTCCGAAGAGGCCTCGGAA
TCACTTGCTCCAGAACCTTCTGCGACGGAAGACCCTACAGCACAGGGCAAAAATCTGAGTGGTGTGCACTGGGTGGGCAT
TAATTTGGTTGGAGCAGAGCTGGAAGAAGCGGATCTGTCCCAGGCGTACTTGTTTATTGTCAATTTGCAGGATAGTAACC
TGCGAGCCACCAATTTTAGTAATGCCCGCCTCCGCTATACGGACTTTCGTCGAGCCAATTTGACCAATAGCAATTTAGAA
GGTGCCGATCTACGCTATGCCAATTTAGAAGGTGCCGATCTCAACCTAGCCAAGCTGCACAAAAGTAAAATCAATATCAA
AACGGTTCTGGCGGATAAATGGCGGCAGGTGTGGGAGCTAGTCAACCAGGGGGGCAGGGAGCTAGACCTCAAAACCGCTG
ATTTAGCCCAAGCGGATTTGAACCAAGTGGACTTTTTCCGGGCGCAGCTTCCCCAAGCGAACCTTGCCCAAAGTATTTTG
GATGGGGCGAATTTGACGGAAGCCAATCTGTTTCGGGCCGATCTGACAGGAGCTAGTTTGAAGGCTGCGACCTTAAAGAA
TGCCAACTTAGCAGAAGCCAATTTGGAGAATGCCAATATTGAGGGCACAAACCTTGATGATGCCTATCTGTGTGGAGCCA
TAATGCCTGATGGAACAACCCACTCCTGTCCTTAG

Upstream 100 bases:

>100_bases
TGAACATGCCATGATCTGTAGTTGATCTTTCCTAAAATCTGAGGTTCGGATTTTGCGGATAAGCCAGACTCTCAAAGTCA
CATCTGGATTGGTTTATGGA

Downstream 100 bases:

>100_bases
GGAAAGAGTCTCAGTAGTTACTAGAAATCGGAATTGCCGATTGCGACGGTATAGATGGTCTGTGGGACCGTTGCTGTGGG
GGTTGGCCTTCGCCCTGCTC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MVALTLLSQPVQAAKGDHVDQLKETRECADCQLDKAKLGGADLRNANLKGANLKEANLRGAKLDGADLLRADLKQADLRE
ANLSSAQLTLSNLEKSQLGAAILFRANLSQAQLTLSNLENAQLRDANLSQANLTEANLARANLGKAQLNQANLTTANLSQ
ARLQNASLVGTQLINANLEGASLKGANLIGADLTGANLVNADLREAKLDDTTVIDPKWRNAWAIVNQKQIESPVSEEASE
SLAPEPSATEDPTAQGKNLSGVHWVGINLVGAELEEADLSQAYLFIVNLQDSNLRATNFSNARLRYTDFRRANLTNSNLE
GADLRYANLEGADLNLAKLHKSKINIKTVLADKWRQVWELVNQGGRELDLKTADLAQADLNQVDFFRAQLPQANLAQSIL
DGANLTEANLFRADLTGASLKAATLKNANLAEANLENANIEGTNLDDAYLCGAIMPDGTTHSCP

Sequences:

>Translated_464_residues
MVALTLLSQPVQAAKGDHVDQLKETRECADCQLDKAKLGGADLRNANLKGANLKEANLRGAKLDGADLLRADLKQADLRE
ANLSSAQLTLSNLEKSQLGAAILFRANLSQAQLTLSNLENAQLRDANLSQANLTEANLARANLGKAQLNQANLTTANLSQ
ARLQNASLVGTQLINANLEGASLKGANLIGADLTGANLVNADLREAKLDDTTVIDPKWRNAWAIVNQKQIESPVSEEASE
SLAPEPSATEDPTAQGKNLSGVHWVGINLVGAELEEADLSQAYLFIVNLQDSNLRATNFSNARLRYTDFRRANLTNSNLE
GADLRYANLEGADLNLAKLHKSKINIKTVLADKWRQVWELVNQGGRELDLKTADLAQADLNQVDFFRAQLPQANLAQSIL
DGANLTEANLFRADLTGASLKAATLKNANLAEANLENANIEGTNLDDAYLCGAIMPDGTTHSCP
>Mature_464_residues
MVALTLLSQPVQAAKGDHVDQLKETRECADCQLDKAKLGGADLRNANLKGANLKEANLRGAKLDGADLLRADLKQADLRE
ANLSSAQLTLSNLEKSQLGAAILFRANLSQAQLTLSNLENAQLRDANLSQANLTEANLARANLGKAQLNQANLTTANLSQ
ARLQNASLVGTQLINANLEGASLKGANLIGADLTGANLVNADLREAKLDDTTVIDPKWRNAWAIVNQKQIESPVSEEASE
SLAPEPSATEDPTAQGKNLSGVHWVGINLVGAELEEADLSQAYLFIVNLQDSNLRATNFSNARLRYTDFRRANLTNSNLE
GADLRYANLEGADLNLAKLHKSKINIKTVLADKWRQVWELVNQGGRELDLKTADLAQADLNQVDFFRAQLPQANLAQSIL
DGANLTEANLFRADLTGASLKAATLKNANLAEANLENANIEGTNLDDAYLCGAIMPDGTTHSCP

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=161, Percent_Identity=35.4037267080745, Blast_Score=80, Evalue=5e-15,
Organism=Drosophila melanogaster, GI221377802, Length=180, Percent_Identity=35.5555555555556, Blast_Score=85, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 49808; Mature: 49808

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVALTLLSQPVQAAKGDHVDQLKETRECADCQLDKAKLGGADLRNANLKGANLKEANLRG
CEEEEEHHCCHHHHCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
AKLDGADLLRADLKQADLREANLSSAQLTLSNLEKSQLGAAILFRANLSQAQLTLSNLEN
CCCCCHHHHHHHHHHHHHHHCCCCHHEEEHHHCCHHHCCEEEEEECCCCHHHEEHHHCCC
AQLRDANLSQANLTEANLARANLGKAQLNQANLTTANLSQARLQNASLVGTQLINANLEG
CEECCCCCCCCCCCHHHHHHHCCCHHHCCCCCCEECCCHHHHHCCCHHHHHHEEECCCCC
ASLKGANLIGADLTGANLVNADLREAKLDDTTVIDPKWRNAWAIVNQKQIESPVSEEASE
CCCCCCEEEECCCCCCCEECCCHHHCCCCCCEEECCCCCCEEEEECHHHHCCCHHHHHHH
SLAPEPSATEDPTAQGKNLSGVHWVGINLVGAELEEADLSQAYLFIVNLQDSNLRATNFS
HCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEECCC
NARLRYTDFRRANLTNSNLEGADLRYANLEGADLNLAKLHKSKINIKTVLADKWRQVWEL
CCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEHHHHHHHHHHHHH
VNQGGRELDLKTADLAQADLNQVDFFRAQLPQANLAQSILDGANLTEANLFRADLTGASL
HHCCCCEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHEEEEECCCCCE
KAATLKNANLAEANLENANIEGTNLDDAYLCGAIMPDGTTHSCP
EEEEECCCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCCCCCC
>Mature Secondary Structure
MVALTLLSQPVQAAKGDHVDQLKETRECADCQLDKAKLGGADLRNANLKGANLKEANLRG
CEEEEEHHCCHHHHCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
AKLDGADLLRADLKQADLREANLSSAQLTLSNLEKSQLGAAILFRANLSQAQLTLSNLEN
CCCCCHHHHHHHHHHHHHHHCCCCHHEEEHHHCCHHHCCEEEEEECCCCHHHEEHHHCCC
AQLRDANLSQANLTEANLARANLGKAQLNQANLTTANLSQARLQNASLVGTQLINANLEG
CEECCCCCCCCCCCHHHHHHHCCCHHHCCCCCCEECCCHHHHHCCCHHHHHHEEECCCCC
ASLKGANLIGADLTGANLVNADLREAKLDDTTVIDPKWRNAWAIVNQKQIESPVSEEASE
CCCCCCEEEECCCCCCCEECCCHHHCCCCCCEEECCCCCCEEEEECHHHHCCCHHHHHHH
SLAPEPSATEDPTAQGKNLSGVHWVGINLVGAELEEADLSQAYLFIVNLQDSNLRATNFS
HCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEECCC
NARLRYTDFRRANLTNSNLEGADLRYANLEGADLNLAKLHKSKINIKTVLADKWRQVWEL
CCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEHHHHHHHHHHHHH
VNQGGRELDLKTADLAQADLNQVDFFRAQLPQANLAQSILDGANLTEANLFRADLTGASL
HHCCCCEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHEEEEECCCCCE
KAATLKNANLAEANLENANIEGTNLDDAYLCGAIMPDGTTHSCP
EEEEECCCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]