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The map label for this gene is yrvJ [H]

Identifier: 158338413

GI number: 158338413

Start: 5377048

End: 5378790

Strand: Direct

Name: yrvJ [H]

Synonym: AM1_5313

Alternate gene names: 158338413

Gene position: 5377048-5378790 (Clockwise)

Preceding gene: 158338412

Following gene: 158338417

Centisome position: 82.68

GC content: 50.6

Gene sequence:

>1743_bases
ATGAAGCGCATTTTGGGATTAGCAATTCTTGCTGGGAGTTTGAGTTTGGTCTATCCCCATGCTGCTGTTGCCGGAGATGC
CTTAGGGGTGGTCTACCCTGCCAATGGACATAAAACCACTGCGGCTCAGATCTTTCTGATTGGCACGGCTCCTGCTCCAG
GAGAGGTGACGGTGAATGGCAAGGTGATTGACCGCAGCCCTACCGGAAACTTTGCCCCCAGTTTTCCCCTAGAGATTGGC
GAAAATACCTTTACACTTCAGTACGGTGACCAAACGCTCACCCTCAACATCACTCGCACATCAACTTCACCCCAACCCAC
GGCAGGTTTATCCGAAGACTCTCTAGAACCCAAAACTGATATTGCTAAACTCCCCAATGAGCCTGTTTGTTTTACCACGA
TTGCAAAACCGAACGCTCAGCTCTCGGTTAAAATCGGGCAACAAACCGTTCCCTTGCAACCGCAAGGGCAATCCGTCAAC
TTACCCCCCAACTCATCCGCTTTAACCCAGCAGAATCAACCCCAAACCACGGATCAACCGGGAGTGTATCAGGGATGTAC
TGCCTTCTCTCAACCCGGTGTCTTGGGTAAGCCCGTGTTTCAGCTGACAAAAGATGGGCAAACCCTCCAGCGAACAGGAG
CGAGTACCATTGAAATTCTCTCGCCCCAAGACTTCTCTGTGATCGAAGTAACGAGTGATCAGGGAGTGGCGCGCACAGGA
CCGAGTACGAACTACTCTCGGTTAACGCCTTTACCCAAAGGAACGCAAGCTCGCATCACTGGACGGGAAGGGGAGTGGTT
GCGATTAGACTATGGCGCTTGGATCAAAGCAAAAGAAACCCGTCCCCTATCCCAGAATATTCTGCCCCATTCTATTATTC
GTAGTCTTCGCAGTCGCCAAGCTCCGGGCTGGACTGAAGTGGTTTTTCCGCTGCAAAATCCCGTGCCAATTAGCGTCAAC
CAGGGGGATCAAACCTTTACCTTGACTCTGCATAACACCACAGCTCAAACCGATGTCATTTTTATGAATGACGACCCGGT
CATTCGACGACTAGATTGGCAACAGCCGGGGCCAGGTCAGGTGGAATATAAATTCAACCTCAAGCCCAAACAACAGTGGG
GTTATAAGCTGCGCTACGAAGGCACCAGCTTGATACTCTCCCTGCGGCATCCCCCTAAAGGCAAAGGACTCTCCAATGTG
AAAGTGCTGCTAGATCCAGGACATGGCAGCGAAAATGATCTAGGTGCTCGGGGACCCACGGGTTTACCCGAAAAAGAAGT
CACCATTGTCGTCAGTAAACTGCTCCAGGAAGAATTGAAGAAGCGGGGAACAACCGTTGTGATGACCCGCGAAGGGGACG
ATGACCTCTATCCCAAGGATCGGGTGGATGTTATCAACCAAACGGAACCGACCATTGCCATTAGCGTTCACTACAATGCA
TTACCCGATAGTGGTGATGCAGTGAACACGGCAGGAATTGGAGCCTTTTGGTACCATGCCCAAAGCCATGATTTAGCAGT
CTTTTTACATCATTACCTAGTCGATGATCTGAAGCGGCCTGACTACGGTATTTTTTGGGATAATTTGGCGTTAACTCGAC
CAACGGTGGCACCGACTGTGTTGATGGAGTTGGGATTTATGATTAATCCGACGGAGTTCGAGTGGATTACAGATCCGAAG
GCTCAGAAGCAGTTGGCGGTTAGTATGGCGGATGCGATCGCAGCCTGGTTCTCAAAACAATAA

Upstream 100 bases:

>100_bases
TCTGCCCATTTGGGCAATTATAATCACCACCCCATAGTTCTGAATATTGACAGGGACACGGGATTACGGTTGATTAAAGT
GGATGTGAAGGGTAGAGTCC

Downstream 100 bases:

>100_bases
AGCTAATCCCTGGAGCTACTCTTCAGCTCACCCAATCTGAAGAGTGCAACGAATTCCCTAACTAGCTATCCGTTTCAACT
TTAGTGAGGTGGATATGCTT

Product: N-acetylmuramoyl-L-alanine amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 580; Mature: 580

Protein sequence:

>580_residues
MKRILGLAILAGSLSLVYPHAAVAGDALGVVYPANGHKTTAAQIFLIGTAPAPGEVTVNGKVIDRSPTGNFAPSFPLEIG
ENTFTLQYGDQTLTLNITRTSTSPQPTAGLSEDSLEPKTDIAKLPNEPVCFTTIAKPNAQLSVKIGQQTVPLQPQGQSVN
LPPNSSALTQQNQPQTTDQPGVYQGCTAFSQPGVLGKPVFQLTKDGQTLQRTGASTIEILSPQDFSVIEVTSDQGVARTG
PSTNYSRLTPLPKGTQARITGREGEWLRLDYGAWIKAKETRPLSQNILPHSIIRSLRSRQAPGWTEVVFPLQNPVPISVN
QGDQTFTLTLHNTTAQTDVIFMNDDPVIRRLDWQQPGPGQVEYKFNLKPKQQWGYKLRYEGTSLILSLRHPPKGKGLSNV
KVLLDPGHGSENDLGARGPTGLPEKEVTIVVSKLLQEELKKRGTTVVMTREGDDDLYPKDRVDVINQTEPTIAISVHYNA
LPDSGDAVNTAGIGAFWYHAQSHDLAVFLHHYLVDDLKRPDYGIFWDNLALTRPTVAPTVLMELGFMINPTEFEWITDPK
AQKQLAVSMADAIAAWFSKQ

Sequences:

>Translated_580_residues
MKRILGLAILAGSLSLVYPHAAVAGDALGVVYPANGHKTTAAQIFLIGTAPAPGEVTVNGKVIDRSPTGNFAPSFPLEIG
ENTFTLQYGDQTLTLNITRTSTSPQPTAGLSEDSLEPKTDIAKLPNEPVCFTTIAKPNAQLSVKIGQQTVPLQPQGQSVN
LPPNSSALTQQNQPQTTDQPGVYQGCTAFSQPGVLGKPVFQLTKDGQTLQRTGASTIEILSPQDFSVIEVTSDQGVARTG
PSTNYSRLTPLPKGTQARITGREGEWLRLDYGAWIKAKETRPLSQNILPHSIIRSLRSRQAPGWTEVVFPLQNPVPISVN
QGDQTFTLTLHNTTAQTDVIFMNDDPVIRRLDWQQPGPGQVEYKFNLKPKQQWGYKLRYEGTSLILSLRHPPKGKGLSNV
KVLLDPGHGSENDLGARGPTGLPEKEVTIVVSKLLQEELKKRGTTVVMTREGDDDLYPKDRVDVINQTEPTIAISVHYNA
LPDSGDAVNTAGIGAFWYHAQSHDLAVFLHHYLVDDLKRPDYGIFWDNLALTRPTVAPTVLMELGFMINPTEFEWITDPK
AQKQLAVSMADAIAAWFSKQ
>Mature_580_residues
MKRILGLAILAGSLSLVYPHAAVAGDALGVVYPANGHKTTAAQIFLIGTAPAPGEVTVNGKVIDRSPTGNFAPSFPLEIG
ENTFTLQYGDQTLTLNITRTSTSPQPTAGLSEDSLEPKTDIAKLPNEPVCFTTIAKPNAQLSVKIGQQTVPLQPQGQSVN
LPPNSSALTQQNQPQTTDQPGVYQGCTAFSQPGVLGKPVFQLTKDGQTLQRTGASTIEILSPQDFSVIEVTSDQGVARTG
PSTNYSRLTPLPKGTQARITGREGEWLRLDYGAWIKAKETRPLSQNILPHSIIRSLRSRQAPGWTEVVFPLQNPVPISVN
QGDQTFTLTLHNTTAQTDVIFMNDDPVIRRLDWQQPGPGQVEYKFNLKPKQQWGYKLRYEGTSLILSLRHPPKGKGLSNV
KVLLDPGHGSENDLGARGPTGLPEKEVTIVVSKLLQEELKKRGTTVVMTREGDDDLYPKDRVDVINQTEPTIAISVHYNA
LPDSGDAVNTAGIGAFWYHAQSHDLAVFLHHYLVDDLKRPDYGIFWDNLALTRPTVAPTVLMELGFMINPTEFEWITDPK
AQKQLAVSMADAIAAWFSKQ

Specific function: Probably involved in cell-wall metabolism [H]

COG id: COG0860

COG function: function code M; N-acetylmuramoyl-L-alanine amidase

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002508
- InterPro:   IPR017293
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 63284; Mature: 63284

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRILGLAILAGSLSLVYPHAAVAGDALGVVYPANGHKTTAAQIFLIGTAPAPGEVTVNG
CCHHHEEEEHHCCEEEEECCHHHCCCCEEEEECCCCCEEEEEEEEEEECCCCCCEEEEEC
KVIDRSPTGNFAPSFPLEIGENTFTLQYGDQTLTLNITRTSTSPQPTAGLSEDSLEPKTD
EEEECCCCCCCCCCCCCEECCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCHH
IAKLPNEPVCFTTIAKPNAQLSVKIGQQTVPLQPQGQSVNLPPNSSALTQQNQPQTTDQP
HHHCCCCCEEEEEECCCCCEEEEEECCEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
GVYQGCTAFSQPGVLGKPVFQLTKDGQTLQRTGASTIEILSPQDFSVIEVTSDQGVARTG
CCHHCCHHCCCCCCCCCCHHEECCCCCHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCC
PSTNYSRLTPLPKGTQARITGREGEWLRLDYGAWIKAKETRPLSQNILPHSIIRSLRSRQ
CCCCCCEECCCCCCCEEEEECCCCCEEEEECCCEEEECCCCCHHHCCCHHHHHHHHHHCC
APGWTEVVFPLQNPVPISVNQGDQTFTLTLHNTTAQTDVIFMNDDPVIRRLDWQQPGPGQ
CCCCEEEEEECCCCEEEEECCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCE
VEYKFNLKPKQQWGYKLRYEGTSLILSLRHPPKGKGLSNVKVLLDPGHGSENDLGARGPT
EEEEECCCCHHHCCEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
GLPEKEVTIVVSKLLQEELKKRGTTVVMTREGDDDLYPKDRVDVINQTEPTIAISVHYNA
CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHCCCCCCEEEEEEEECC
LPDSGDAVNTAGIGAFWYHAQSHDLAVFLHHYLVDDLKRPDYGIFWDNLALTRPTVAPTV
CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCEEECCCCCHHHH
LMELGFMINPTEFEWITDPKAQKQLAVSMADAIAAWFSKQ
HHHCCCEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKRILGLAILAGSLSLVYPHAAVAGDALGVVYPANGHKTTAAQIFLIGTAPAPGEVTVNG
CCHHHEEEEHHCCEEEEECCHHHCCCCEEEEECCCCCEEEEEEEEEEECCCCCCEEEEEC
KVIDRSPTGNFAPSFPLEIGENTFTLQYGDQTLTLNITRTSTSPQPTAGLSEDSLEPKTD
EEEECCCCCCCCCCCCCEECCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCHH
IAKLPNEPVCFTTIAKPNAQLSVKIGQQTVPLQPQGQSVNLPPNSSALTQQNQPQTTDQP
HHHCCCCCEEEEEECCCCCEEEEEECCEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
GVYQGCTAFSQPGVLGKPVFQLTKDGQTLQRTGASTIEILSPQDFSVIEVTSDQGVARTG
CCHHCCHHCCCCCCCCCCHHEECCCCCHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCC
PSTNYSRLTPLPKGTQARITGREGEWLRLDYGAWIKAKETRPLSQNILPHSIIRSLRSRQ
CCCCCCEECCCCCCCEEEEECCCCCEEEEECCCEEEECCCCCHHHCCCHHHHHHHHHHCC
APGWTEVVFPLQNPVPISVNQGDQTFTLTLHNTTAQTDVIFMNDDPVIRRLDWQQPGPGQ
CCCCEEEEEECCCCEEEEECCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCE
VEYKFNLKPKQQWGYKLRYEGTSLILSLRHPPKGKGLSNVKVLLDPGHGSENDLGARGPT
EEEEECCCCHHHCCEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
GLPEKEVTIVVSKLLQEELKKRGTTVVMTREGDDDLYPKDRVDVINQTEPTIAISVHYNA
CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHCCCCCCEEEEEEEECC
LPDSGDAVNTAGIGAFWYHAQSHDLAVFLHHYLVDDLKRPDYGIFWDNLALTRPTVAPTV
CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCEEECCCCCHHHH
LMELGFMINPTEFEWITDPKAQKQLAVSMADAIAAWFSKQ
HHHCCCEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]