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The map label for this gene is 158338352

Identifier: 158338352

GI number: 158338352

Start: 5313477

End: 5315492

Strand: Reverse

Name: 158338352

Synonym: AM1_5248

Alternate gene names: NA

Gene position: 5315492-5313477 (Counterclockwise)

Preceding gene: 158338353

Following gene: 158338351

Centisome position: 81.73

GC content: 45.19

Gene sequence:

>2016_bases
ATGCAGAAAAATATCCACAAAAAGGTTTATGCTAGAACATTCTTTTTGGGGCTTGCGATTGCGGCAGGAGAATTAAGCGT
AAACGCAACTCCAATAACATCACTAAATAGCGGTCAACAGAATTCTCCTATTGTTGCTGAGTCTGGGAATTTTCCTAAGT
CGAAATTTTTTCAACCTATCCAAATTGCTAATGCAGAAGAATTAACCATTAATGAGCTGCTGGGATCAGGGTCAAACAAG
ACTTACCAAGGTGATCGTAGTCTTCATGATCTGGAAGATAATTCACAAGCTCAGGTTACTGCTGTAGGCCAACTGAGCGA
TGTAGATCCAACAGACTGGGCTTTTCAAGCGATTCAATCCTTAGTTGAGCGATACGGCTGTGTTGCCGGATATCCGAATG
GAACATTTAGGCCCAGCCGCGCTATTTCCCGCCGTGAAGCTGCTGCTTTGGTTAATGCGTGTTTAGATAATCTCAGCAAT
CGTTTTGCCACTAAGGAAGATTTAGATGCGCTCAAAGCACTTCAAGATGAGTTTGCTGCAGAACTCGCCACATTAAGAGG
ACGTGTTGATGGATTGGAAGCACGGGTAGCAACGGTTGAAGCCCAGCAATTTTCAACAACCACCAAACTACAGGGTGAGG
TGGTTATGGCCGCTCAATTTGGGGACTTTGTTAGTAACGCTCAAAATACATTTCCTGTTCCAAGGGCAATCCCTAATGGG
AATGCTCCTGGGCTAGTCGCAACCAATTCCCTGAACCCTTTACAACCCACGAATCTAACTACGATTAGTGACTCTCGGCC
ATCGGCAATTGCCCGAGTTCGGCTTAACTTTAACACCAGTTTTTACGGCGATGATTTGCTCCAAACTCAGTTCGAATTTG
GGAATGGGGGGTTAGACTTTTTCTCAGCAGCAGGGCTTAACTCTCCCGTATCTAATGGAATCGGGGGTCCCTTGGGCAAT
CCTGGACCATTTGTAGGAGGGGATCCAAACCCGTTCCCCGTTCCACGTGTTGTGGGTGGTACTTCACCAGGCAATAATCT
TGGGGTTTCACTGGTTGACTTAGGGGCTGTTGACTACGCCGGACTGAGAAATGGTGTAGTCTTGCGTCGATTAGCATATA
GCTTTAAACCCATTGGTCAGGATGTAACTCTTACGGTGGGGACAAACATGTTCCCGAGCGATTTTATCGATAGCAATAGT
TATGCCAATAATTCTGCCCAGGATTTCAACTCTGGATTTTTCATCAATAACCCTTTAATCATTGCCAACTCTACGGGATT
TTCTGCTGGAAACTGGGTCCCAGGTGGTGCTGGTGCGGCTGTTGATTGGAATGTTAACGGTGGACCAGTTAGTTTCCGGG
CTCTCTATATTGCTAGAGATGGAAAGATTGCCGGACGAAATCCTGGTAGCGCTTTATGTGATCCTGCTTTTCCGTGTACT
GGTGGATTATTTGGCGATCCTTATCAGGCTTCCGCTGAATTAGAGTATGCCGATACTTGGGGAGAGGAAGCTCAGAATAA
TTTTGCGGTTCGATTGCAATATACCCATTCAGAGACGAATAACGTTCGACAGAATGCCCTTGGTGCTAATGTTGAGGCAA
CTTTTAACCGCCGATTTGGGATCTTTGGTCGGATCGGCTATTCGATTGATCCACAGATTGTAGTTAACACAGTCACTGGA
CAACGAGGCGATCTATTTAACCCTGATCCCAATAATGCATTCGGTACTGGTATAGGAAATACTGGTATTAGTAACTACAT
CCTAACCTGGATGGGTGGTTTAGGCATTCGGGATCTTGGCGCACCGGGTTCTTTACTTGCCGTTGCTATAGGTCAACCCT
TTGTCGTTGCTGGTGATGGTCAACCTTCTCAAACTAACTTTGAAGCGTTTTATCGATTTTCGATTAACGACAATATTACT
CTGACACCAACTGTGATGTTTATTTCAAACCCCTTTAATTTAAGTGGCAATAACGATGTCATTCAGGGGCTACTTCGGGC
AACGTTCTCTTTTTAA

Upstream 100 bases:

>100_bases
GGCTAAGCTCCTCACCCCATGCGAGGAGCTTAGCTTCAAAGCATACAAAATACTGACAAAATAAGTTAGTTAAAAATTAA
TGGTGTGAGAAAGTAAAATT

Downstream 100 bases:

>100_bases
GAAAGACCCATGGGTTTGAGGAGTAAGCCTTTCATTGGAATTAGAACATATGGAACGGGCGTTCTTTACGGTTCTTTCTT
GAGAAGCTAAGACACCTTTA

Product: porin; major outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 671; Mature: 671

Protein sequence:

>671_residues
MQKNIHKKVYARTFFLGLAIAAGELSVNATPITSLNSGQQNSPIVAESGNFPKSKFFQPIQIANAEELTINELLGSGSNK
TYQGDRSLHDLEDNSQAQVTAVGQLSDVDPTDWAFQAIQSLVERYGCVAGYPNGTFRPSRAISRREAAALVNACLDNLSN
RFATKEDLDALKALQDEFAAELATLRGRVDGLEARVATVEAQQFSTTTKLQGEVVMAAQFGDFVSNAQNTFPVPRAIPNG
NAPGLVATNSLNPLQPTNLTTISDSRPSAIARVRLNFNTSFYGDDLLQTQFEFGNGGLDFFSAAGLNSPVSNGIGGPLGN
PGPFVGGDPNPFPVPRVVGGTSPGNNLGVSLVDLGAVDYAGLRNGVVLRRLAYSFKPIGQDVTLTVGTNMFPSDFIDSNS
YANNSAQDFNSGFFINNPLIIANSTGFSAGNWVPGGAGAAVDWNVNGGPVSFRALYIARDGKIAGRNPGSALCDPAFPCT
GGLFGDPYQASAELEYADTWGEEAQNNFAVRLQYTHSETNNVRQNALGANVEATFNRRFGIFGRIGYSIDPQIVVNTVTG
QRGDLFNPDPNNAFGTGIGNTGISNYILTWMGGLGIRDLGAPGSLLAVAIGQPFVVAGDGQPSQTNFEAFYRFSINDNIT
LTPTVMFISNPFNLSGNNDVIQGLLRATFSF

Sequences:

>Translated_671_residues
MQKNIHKKVYARTFFLGLAIAAGELSVNATPITSLNSGQQNSPIVAESGNFPKSKFFQPIQIANAEELTINELLGSGSNK
TYQGDRSLHDLEDNSQAQVTAVGQLSDVDPTDWAFQAIQSLVERYGCVAGYPNGTFRPSRAISRREAAALVNACLDNLSN
RFATKEDLDALKALQDEFAAELATLRGRVDGLEARVATVEAQQFSTTTKLQGEVVMAAQFGDFVSNAQNTFPVPRAIPNG
NAPGLVATNSLNPLQPTNLTTISDSRPSAIARVRLNFNTSFYGDDLLQTQFEFGNGGLDFFSAAGLNSPVSNGIGGPLGN
PGPFVGGDPNPFPVPRVVGGTSPGNNLGVSLVDLGAVDYAGLRNGVVLRRLAYSFKPIGQDVTLTVGTNMFPSDFIDSNS
YANNSAQDFNSGFFINNPLIIANSTGFSAGNWVPGGAGAAVDWNVNGGPVSFRALYIARDGKIAGRNPGSALCDPAFPCT
GGLFGDPYQASAELEYADTWGEEAQNNFAVRLQYTHSETNNVRQNALGANVEATFNRRFGIFGRIGYSIDPQIVVNTVTG
QRGDLFNPDPNNAFGTGIGNTGISNYILTWMGGLGIRDLGAPGSLLAVAIGQPFVVAGDGQPSQTNFEAFYRFSINDNIT
LTPTVMFISNPFNLSGNNDVIQGLLRATFSF
>Mature_671_residues
MQKNIHKKVYARTFFLGLAIAAGELSVNATPITSLNSGQQNSPIVAESGNFPKSKFFQPIQIANAEELTINELLGSGSNK
TYQGDRSLHDLEDNSQAQVTAVGQLSDVDPTDWAFQAIQSLVERYGCVAGYPNGTFRPSRAISRREAAALVNACLDNLSN
RFATKEDLDALKALQDEFAAELATLRGRVDGLEARVATVEAQQFSTTTKLQGEVVMAAQFGDFVSNAQNTFPVPRAIPNG
NAPGLVATNSLNPLQPTNLTTISDSRPSAIARVRLNFNTSFYGDDLLQTQFEFGNGGLDFFSAAGLNSPVSNGIGGPLGN
PGPFVGGDPNPFPVPRVVGGTSPGNNLGVSLVDLGAVDYAGLRNGVVLRRLAYSFKPIGQDVTLTVGTNMFPSDFIDSNS
YANNSAQDFNSGFFINNPLIIANSTGFSAGNWVPGGAGAAVDWNVNGGPVSFRALYIARDGKIAGRNPGSALCDPAFPCT
GGLFGDPYQASAELEYADTWGEEAQNNFAVRLQYTHSETNNVRQNALGANVEATFNRRFGIFGRIGYSIDPQIVVNTVTG
QRGDLFNPDPNNAFGTGIGNTGISNYILTWMGGLGIRDLGAPGSLLAVAIGQPFVVAGDGQPSQTNFEAFYRFSINDNIT
LTPTVMFISNPFNLSGNNDVIQGLLRATFSF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SLH (S-layer homology) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049
- InterPro:   IPR001119 [H]

Pfam domain/function: PF04966 OprB; PF00395 SLH [H]

EC number: NA

Molecular weight: Translated: 71264; Mature: 71264

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS01072 SLH_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKNIHKKVYARTFFLGLAIAAGELSVNATPITSLNSGQQNSPIVAESGNFPKSKFFQPI
CCCCHHHHHHHHHHHHHHHEEECCEEECCCCCCCCCCCCCCCCEEEECCCCCHHHCCCCE
QIANAEELTINELLGSGSNKTYQGDRSLHDLEDNSQAQVTAVGQLSDVDPTDWAFQAIQS
EECCCCCEEHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
LVERYGCVAGYPNGTFRPSRAISRREAAALVNACLDNLSNRFATKEDLDALKALQDEFAA
HHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
ELATLRGRVDGLEARVATVEAQQFSTTTKLQGEVVMAAQFGDFVSNAQNTFPVPRAIPNG
HHHHHHHCCCCCEEEEEEEEHHHHCCCEECCCCEEEEEEHHHHHHCCCCCCCCCCCCCCC
NAPGLVATNSLNPLQPTNLTTISDSRPSAIARVRLNFNTSFYGDDLLQTQFEFGNGGLDF
CCCCEEEECCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCCHHH
FSAAGLNSPVSNGIGGPLGNPGPFVGGDPNPFPVPRVVGGTSPGNNLGVSLVDLGAVDYA
HHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCHH
GLRNGVVLRRLAYSFKPIGQDVTLTVGTNMFPSDFIDSNSYANNSAQDFNSGFFINNPLI
HCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCHHCCCCEEECCCEE
IANSTGFSAGNWVPGGAGAAVDWNVNGGPVSFRALYIARDGKIAGRNPGSALCDPAFPCT
EEECCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEECCEECCCCCCCCCCCCCCCCC
GGLFGDPYQASAELEYADTWGEEAQNNFAVRLQYTHSETNNVRQNALGANVEATFNRRFG
CCCCCCCCCCCCEEEEHHHCCHHHCCCEEEEEEEECCCCCHHHHHHCCCCEEEEECCCCC
IFGRIGYSIDPQIVVNTVTGQRGDLFNPDPNNAFGTGIGNTGISNYILTWMGGLGIRDLG
EEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
APGSLLAVAIGQPFVVAGDGQPSQTNFEAFYRFSINDNITLTPTVMFISNPFNLSGNNDV
CCCCEEEEEECCCEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCCCCCCCHHH
IQGLLRATFSF
HHHHHHHHCCC
>Mature Secondary Structure
MQKNIHKKVYARTFFLGLAIAAGELSVNATPITSLNSGQQNSPIVAESGNFPKSKFFQPI
CCCCHHHHHHHHHHHHHHHEEECCEEECCCCCCCCCCCCCCCCEEEECCCCCHHHCCCCE
QIANAEELTINELLGSGSNKTYQGDRSLHDLEDNSQAQVTAVGQLSDVDPTDWAFQAIQS
EECCCCCEEHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
LVERYGCVAGYPNGTFRPSRAISRREAAALVNACLDNLSNRFATKEDLDALKALQDEFAA
HHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
ELATLRGRVDGLEARVATVEAQQFSTTTKLQGEVVMAAQFGDFVSNAQNTFPVPRAIPNG
HHHHHHHCCCCCEEEEEEEEHHHHCCCEECCCCEEEEEEHHHHHHCCCCCCCCCCCCCCC
NAPGLVATNSLNPLQPTNLTTISDSRPSAIARVRLNFNTSFYGDDLLQTQFEFGNGGLDF
CCCCEEEECCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCCHHH
FSAAGLNSPVSNGIGGPLGNPGPFVGGDPNPFPVPRVVGGTSPGNNLGVSLVDLGAVDYA
HHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCHH
GLRNGVVLRRLAYSFKPIGQDVTLTVGTNMFPSDFIDSNSYANNSAQDFNSGFFINNPLI
HCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCHHCCCCEEECCCEE
IANSTGFSAGNWVPGGAGAAVDWNVNGGPVSFRALYIARDGKIAGRNPGSALCDPAFPCT
EEECCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEECCEECCCCCCCCCCCCCCCCC
GGLFGDPYQASAELEYADTWGEEAQNNFAVRLQYTHSETNNVRQNALGANVEATFNRRFG
CCCCCCCCCCCCEEEEHHHCCHHHCCCEEEEEEEECCCCCHHHHHHCCCCEEEEECCCCC
IFGRIGYSIDPQIVVNTVTGQRGDLFNPDPNNAFGTGIGNTGISNYILTWMGGLGIRDLG
EEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
APGSLLAVAIGQPFVVAGDGQPSQTNFEAFYRFSINDNITLTPTVMFISNPFNLSGNNDV
CCCCEEEEEECCCEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCCCCCCCHHH
IQGLLRATFSF
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]