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The map label for this gene is sodCC [H]

Identifier: 158338342

GI number: 158338342

Start: 5306169

End: 5306759

Strand: Direct

Name: sodCC [H]

Synonym: AM1_5239

Alternate gene names: 158338342

Gene position: 5306169-5306759 (Clockwise)

Preceding gene: 158338341

Following gene: 158338344

Centisome position: 81.59

GC content: 51.1

Gene sequence:

>591_bases
ATGTTACCTAAGAAGTTTATCCCTCTGTTTTGTGCTGCGATCGCACTCGTCTTTTTTGCCAGTTGTTCCACCTCAACCCC
CACGAGTACAGCCCCTAGCTCTGCTCCCCAAGACGAGACTGTCGCTGCAGCGGAACCCTTAACCGTCGCCCTCGCGATTC
TTGCTCCTACAGAAGGCAATCAGGTCAGTGGATCGGTTAAATTTCGGCAAATAGAGGATAAAGTCACCATAGCTGTGAAC
CTGAAAGGATTGCAGCCTGACTCAGTCCATGCTTGGCATATCCACGAGTTCGGCGATGCTTCTAGTCTAGATGGCAAAGC
CATGGGCGGTCACTACAACCCGGAAGGAAAGCCCCACGGACTCCCCAATAATCCTGAACGTCATGCAGGGGATTTAGGGA
ACCTCAAGGCCGATAGTCGAGGGGAAGTGATAAGAGAAATTAACGTCAATAACATCACTATCAATGGTCCCAAGAATCCT
ATCCTAGGACGGGGGATGATTATCCATGCTGAGACGGATGATGGTGGTCAACCCACAGGCAATGCTGGCAGCCGAATTGC
CCAAGGTGTGATTGGCCTACCCAAAGCCTAA

Upstream 100 bases:

>100_bases
CTCTGAAAACGCTAGTGAGCGTGGGATTAGGTCTGTGATCCGAAAGGTTGTGATTTTTCAGCGGGAGTGAGATTGTAAAA
AAGTCCGCTCAATGTTCGCT

Downstream 100 bases:

>100_bases
CAGTGTCCCCTGTCTCCATTCAACAAAGCGATCCAACCCATCCATCAGCCCTTCGCCTGATTTAGCAACTGGACGCTTAC
TTGAACCGGATCTATCCACC

Product: copper/zinc superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MLPKKFIPLFCAAIALVFFASCSTSTPTSTAPSSAPQDETVAAAEPLTVALAILAPTEGNQVSGSVKFRQIEDKVTIAVN
LKGLQPDSVHAWHIHEFGDASSLDGKAMGGHYNPEGKPHGLPNNPERHAGDLGNLKADSRGEVIREINVNNITINGPKNP
ILGRGMIIHAETDDGGQPTGNAGSRIAQGVIGLPKA

Sequences:

>Translated_196_residues
MLPKKFIPLFCAAIALVFFASCSTSTPTSTAPSSAPQDETVAAAEPLTVALAILAPTEGNQVSGSVKFRQIEDKVTIAVN
LKGLQPDSVHAWHIHEFGDASSLDGKAMGGHYNPEGKPHGLPNNPERHAGDLGNLKADSRGEVIREINVNNITINGPKNP
ILGRGMIIHAETDDGGQPTGNAGSRIAQGVIGLPKA
>Mature_196_residues
MLPKKFIPLFCAAIALVFFASCSTSTPTSTAPSSAPQDETVAAAEPLTVALAILAPTEGNQVSGSVKFRQIEDKVTIAVN
LKGLQPDSVHAWHIHEFGDASSLDGKAMGGHYNPEGKPHGLPNNPERHAGDLGNLKADSRGEVIREINVNNITINGPKNP
ILGRGMIIHAETDDGGQPTGNAGSRIAQGVIGLPKA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=143, Percent_Identity=39.1608391608392, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI4826665, Length=155, Percent_Identity=35.4838709677419, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI71981876, Length=170, Percent_Identity=37.6470588235294, Blast_Score=92, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71981879, Length=156, Percent_Identity=37.8205128205128, Blast_Score=91, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17554806, Length=161, Percent_Identity=35.4037267080745, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17537871, Length=179, Percent_Identity=34.6368715083799, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322564, Length=156, Percent_Identity=39.7435897435897, Blast_Score=94, Evalue=1e-20,
Organism=Drosophila melanogaster, GI85725006, Length=205, Percent_Identity=34.1463414634146, Blast_Score=97, Evalue=4e-21,
Organism=Drosophila melanogaster, GI116007680, Length=159, Percent_Identity=40.251572327044, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI45551081, Length=190, Percent_Identity=37.3684210526316, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24652737, Length=190, Percent_Identity=37.3684210526316, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI17136496, Length=143, Percent_Identity=39.8601398601399, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI281363087, Length=112, Percent_Identity=39.2857142857143, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24652342, Length=112, Percent_Identity=39.2857142857143, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 20426; Mature: 20426

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPKKFIPLFCAAIALVFFASCSTSTPTSTAPSSAPQDETVAAAEPLTVALAILAPTEGN
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCC
QVSGSVKFRQIEDKVTIAVNLKGLQPDSVHAWHIHEFGDASSLDGKAMGGHYNPEGKPHG
EECCEEEEEEECCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
LPNNPERHAGDLGNLKADSRGEVIREINVNNITINGPKNPILGRGMIIHAETDDGGQPTG
CCCCCHHHCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCEEEEEECCCCCCCCC
NAGSRIAQGVIGLPKA
CHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLPKKFIPLFCAAIALVFFASCSTSTPTSTAPSSAPQDETVAAAEPLTVALAILAPTEGN
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCC
QVSGSVKFRQIEDKVTIAVNLKGLQPDSVHAWHIHEFGDASSLDGKAMGGHYNPEGKPHG
EECCEEEEEEECCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
LPNNPERHAGDLGNLKADSRGEVIREINVNNITINGPKNPILGRGMIIHAETDDGGQPTG
CCCCCHHHCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCEEEEEECCCCCCCCC
NAGSRIAQGVIGLPKA
CHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]